BAC Information

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BAC

Clone NameMSMg01-261C24
Chromosome14 (Build37)
Map Location 89,096,612 - 89,251,476
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261C24.T7 (MSMg01no261_c24.b1)MSMg01-261C24.TJ (MSMg01no261_c24.g1)
ACCAG403645AG403646
length739739
length of high quality
(start - end)		685 (47 - 731)663 (74 - 736)
definitionCHROMAT_FILE: MSMg01no261_c24.b1 PHD_FILE: MSMg01no261_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:31 2005CHROMAT_FILE: MSMg01no261_c24.g1 PHD_FILE: MSMg01no261_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,096,612 - 89,097,293)(89,250,814 - 89,251,476)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGG
AATTCACTGGTGTAGTGCACATTTAGTGCAAGAATACAAAAGATAGCAGA
TGACGATGTGGGTTTGGAAAAATATGAATTCTTTCACACTCTTGATGGAC
CAGTTTAGAATGGAGATTTCCATATTGATTACCAAAGTGATTCATCAAGG
ATACTGATTTTTACATACCAGTAACTCATATGTTGTCTTTAGTATTCTTG
ATGATGGCCACAAAATTTGGGTGAGTTATTACCTTAATTATATGTTGAAA
TTAGCTAACTAGTACAATAAATACTTTCTCATTGTTATAGAGAAAACATT
GTAATCTCAAAATTAATCTTAAACGTTTCTTTACTTCAAAGAAAACATTC
AACAACATACCAATAATTTAAAGAGCCACAATATTTCTACATACTGTAGG
ATTCCTTTCCTTTCAAAATAAATATTCTCTAAGTTATTTCTGTTCTAAGG
TTTGTAAGGACAAATACACATAGATTTTAAATCTTGCAGAAGGGGAAACT
ACTTTCTCACATTTTCTAAAATAATAGTTTCATTTACAACATTCAATAAA
CTATTTGGCATAGTTACTAAATTGTCTTGAGGTTCCTAACAGTATTACTA
AGAATGGAAACATATAAGCATGTTTTCAATCCTTATTGTTTTCTAATGTG
AATCATTCTTAAATCTGCACTAAATCTGTGGATTCAACT

GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACATTTTCTTGAAAATCCCTACAGACT
ATAAATAAATATTCAATAAATACATTTTAGCTACTTCTGGGCAAAAGCAC
TTTGTAAAACACAGGGTTCCTTATCAAATATTGATATAAAACAAAAGAGT
TTGAGGTTTCTTAGTCTCGAAGGAGTACTACCTGTGTGCTGGCAGGAGAG
ATAAAATCCGCTGAATAGTACAAAATATAACTGACACCAGGTTGAAGAAT
AGCACTTTAAACTGACATCACACAAATAACTACAAACACACACACACACG
TACACACACACATGGTGAAGAGAAACTTTCATCAATACTATGCACTGAAT
AGTTTTTAAGTATGAAATCATTAATAATCTCTAATGCCTTCATGACGCTG
AAAGTGCTCCCTCTTGATCCACACATTTCTTTCCTTGATTTATACTCAAA
GAAGTAAACAAATGTATTCACATGAAATGAGGCACATGCATAAAATACTT
CCTTGATTATAACTGCTGAAACTTGAAAAAGGAGCTATATCCAGCAAATT
ATTGGGAAATTAAAATACAGTGCATTGAAACAGGAGAACATTTATCAACA
CAAAGGAATTAGTTAGCATGCATTACAAAATGTGACAAAGTTAAATGTAT
CTTGCTAAATGAAAGAAACAAATTTGGACCTGAAAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_c24.b1 MSMg01no261_c24.b1 CHROMAT_FILE:
MSMg01no261_c24.b1 PHD_FILE: MSMg01no261_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:31 2005
         (685 letters)



>mm_chr14_89096409_89097493
          Length = 1085

 Score = 1311 bits (678), Expect = 0.0
 Identities = 681/682 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcactggtgtagtgcacatttagtgcaagaatacaaaagatagcagatgacgatgt 63
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcactggtgtagtgcagatttagtgcaagaatacaaaagatagcagatgacgatgt 263

                                                                       
Query: 64  gggtttggaaaaatatgaattctttcacactcttgatggaccagtttagaatggagattt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggtttggaaaaatatgaattctttcacactcttgatggaccagtttagaatggagattt 323

                                                                       
Query: 124 ccatattgattaccaaagtgattcatcaaggatactgatttttacataccagtaactcat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccatattgattaccaaagtgattcatcaaggatactgatttttacataccagtaactcat 383

                                                                       
Query: 184 atgttgtctttagtattcttgatgatggccacaaaatttgggtgagttattaccttaatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgttgtctttagtattcttgatgatggccacaaaatttgggtgagttattaccttaatt 443

                                                                       
Query: 244 atatgttgaaattagctaactagtacaataaatactttctcattgttatagagaaaacat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atatgttgaaattagctaactagtacaataaatactttctcattgttatagagaaaacat 503

                                                                       
Query: 304 tgtaatctcaaaattaatcttaaacgtttctttacttcaaagaaaacattcaacaacata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtaatctcaaaattaatcttaaacgtttctttacttcaaagaaaacattcaacaacata 563

                                                                       
Query: 364 ccaataatttaaagagccacaatatttctacatactgtaggattcctttcctttcaaaat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccaataatttaaagagccacaatatttctacatactgtaggattcctttcctttcaaaat 623

                                                                       
Query: 424 aaatattctctaagttatttctgttctaaggtttgtaaggacaaatacacatagatttta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaatattctctaagttatttctgttctaaggtttgtaaggacaaatacacatagatttta 683

                                                                       
Query: 484 aatcttgcagaaggggaaactactttctcacattttctaaaataatagtttcatttacaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatcttgcagaaggggaaactactttctcacattttctaaaataatagtttcatttacaa 743

                                                                       
Query: 544 cattcaataaactatttggcatagttactaaattgtcttgaggttcctaacagtattact 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cattcaataaactatttggcatagttactaaattgtcttgaggttcctaacagtattact 803

                                                                       
Query: 604 aagaatggaaacatataagcatgttttcaatccttattgttttctaatgtgaatcattct 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aagaatggaaacatataagcatgttttcaatccttattgttttctaatgtgaatcattct 863

                                 
Query: 664 taaatctgcactaaatctgtgg 685
           ||||||||||||||||||||||
Sbjct: 864 taaatctgcactaaatctgtgg 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no261_c24.g1 MSMg01no261_c24.g1 CHROMAT_FILE:
MSMg01no261_c24.g1 PHD_FILE: MSMg01no261_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:31 2005
         (663 letters)



>mm_chr14_89250580_89251642
          Length = 1063

 Score = 1282 bits (663), Expect = 0.0
 Identities = 663/663 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattttcttgaaaatccctacagactataaataaatattcaataaatacattttagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 acattttcttgaaaatccctacagactataaataaatattcaataaatacattttagcta 838

                                                                       
Query: 61  cttctgggcaaaagcactttgtaaaacacagggttccttatcaaatattgatataaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 cttctgggcaaaagcactttgtaaaacacagggttccttatcaaatattgatataaaaca 778

                                                                       
Query: 121 aaagagtttgaggtttcttagtctcgaaggagtactacctgtgtgctggcaggagagata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aaagagtttgaggtttcttagtctcgaaggagtactacctgtgtgctggcaggagagata 718

                                                                       
Query: 181 aaatccgctgaatagtacaaaatataactgacaccaggttgaagaatagcactttaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aaatccgctgaatagtacaaaatataactgacaccaggttgaagaatagcactttaaact 658

                                                                       
Query: 241 gacatcacacaaataactacaaacacacacacacacgtacacacacacatggtgaagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gacatcacacaaataactacaaacacacacacacacgtacacacacacatggtgaagaga 598

                                                                       
Query: 301 aactttcatcaatactatgcactgaatagtttttaagtatgaaatcattaataatctcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aactttcatcaatactatgcactgaatagtttttaagtatgaaatcattaataatctcta 538

                                                                       
Query: 361 atgccttcatgacgctgaaagtgctccctcttgatccacacatttctttccttgatttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atgccttcatgacgctgaaagtgctccctcttgatccacacatttctttccttgatttat 478

                                                                       
Query: 421 actcaaagaagtaaacaaatgtattcacatgaaatgaggcacatgcataaaatacttcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 actcaaagaagtaaacaaatgtattcacatgaaatgaggcacatgcataaaatacttcct 418

                                                                       
Query: 481 tgattataactgctgaaacttgaaaaaggagctatatccagcaaattattgggaaattaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tgattataactgctgaaacttgaaaaaggagctatatccagcaaattattgggaaattaa 358

                                                                       
Query: 541 aatacagtgcattgaaacaggagaacatttatcaacacaaaggaattagttagcatgcat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aatacagtgcattgaaacaggagaacatttatcaacacaaaggaattagttagcatgcat 298

                                                                       
Query: 601 tacaaaatgtgacaaagttaaatgtatcttgctaaatgaaagaaacaaatttggacctga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tacaaaatgtgacaaagttaaatgtatcttgctaaatgaaagaaacaaatttggacctga 238

              
Query: 661 aaa 663
           |||
Sbjct: 237 aaa 235


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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