BAC Information

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BAC

Clone NameMSMg01-261J17
Chromosome14 (Build37)
Map Location 54,517,145 - 54,704,363
singlet/doubletdoublet
Overlap geneA630038E17Rik
Upstream geneLOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
Downstream geneEG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261J17.T7 (MSMg01no261_j17.b1)MSMg01-261J17.TJ (MSMg01no261_j17.g1)
ACCAG403943AG403944
length731704
length of high quality
(start - end)		469 (71 - 539)555 (82 - 636)
definitionCHROMAT_FILE: MSMg01no261_j17.b1 PHD_FILE: MSMg01no261_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:02 2005CHROMAT_FILE: MSMg01no261_j17.g1 PHD_FILE: MSMg01no261_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,517,145 - 54,517,613)(54,703,809 - 54,704,363)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATGAAACTTACTTGAATGAAACTGAACTTATTGAACTGAATCAAA
TTGAAATGTGTCGATAGGAAATACCATGTAAGAAGCATGTATCTTGCAAA
CACAAAGTACAGATAATTTATCTAAAATTGATGTAGAAATAAGCCTCAAG
TTCTACATTGAGGTGATAGAATACTAATGTAAGCACAGTAGCCAGAGGGC
TACTCCCATGAAAACAGAAACTTTGTGTCATTTATATTGACTCACATGGA
ATGCTCTGCTACTCTGATTCTTGCAACTCTAGGCTGTTATAAAAACAGAC
CATCAGAATATGTTTTTCAAGGAAAAGTGCTGCAGAGACTGGGGTCTTTT
TTCTTAAATGTCATTGAATGAGCAATAGCTGGAGCAGTTGTCAAGGGCTG
GCTTCCTGCATCACAAGGGAAAGGAGGTGATGTAAAGATTCAGTTGGATT
CAGCTGTTATCATGCTCTAGGATCTGGCAGTTTCTCTGAGGTATCCGGGA
AAGAAGTCAAACAGACTGCACATAGCCAGACATGCCTTCTGGACCACAGT
GGAGAATATATGACAAAGACTACTTTACCTCTCTGCCCAAGGCTCTCACA
CCATTCTTCCTGTGATGATTGCCAAGTGCCCACTGATACAAGTGTTGCCT
TTCAGCAACTAACTGTGTTATTTCATAAGCN

NNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGCCAGTCCCGATGGCA
TTATATGCCTCCCCCAAGACACTGTACTTCTCCATTGGTCCCTCCGGGTT
CTCTTATGGTCCCTACTATTGAGAAGGAAGGGCTCTGTGTCCCAGAAACA
CCAAGGCCTGGGAAAATCCCGGAAGTTTTGCATAGTTCTTTAATAAGAGT
AATAAGTAAAAGGAGTGGTTGTTACAGAAAGAAAGAGAGAAAGAAAGAAA
GAACTTCCCTTCCCTCTTTGCTCTCCTTAATTCTTTATCTTCTCAAAGAG
TATCACCACTACCACGTTAGGTGGTGTGTCTTGAGATGAGGATGATAGCT
GAATTTACAAAATCTCTAAGCTGCTGGGTGTGGTAGGCCACACTTTCAAT
CTCAGGGCTGGAAATGAAGCAGGTGAATCTCCACGAATTTGAGGCCAGGC
TGGAGTTTCCAGTCAGCCGGGACTGCACCGTGAGACCCTGCCTCANAGCC
AAAACGAAGTAAAGCAAAACAACAAAACCTCTAAGCTTTTCTTGACAGGG
AACTAGCTGCATCCTGTGGGTACAGAGTCCCCACGAAATCTCGATGAGCT
GTCCCCTCCCCACCAAAGGAAACTGGTTATATCTAGTTACTTAACAGCAA
AGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_j17.b1 MSMg01no261_j17.b1 CHROMAT_FILE:
MSMg01no261_j17.b1 PHD_FILE: MSMg01no261_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:02 2005
         (469 letters)



>mm_chr14_54516945_54517813
          Length = 869

 Score =  853 bits (441), Expect = 0.0
 Identities = 462/469 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaaactgaacttattgaactgaatcaaattgaaatgtgtcgataggaaataccatgta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 201 atgaaactgaacttattgaactgaatcaaattgaaatgtgtcgataggaaataggatgta 260

                                                                       
Query: 61  agaagcatgtatcttgcaaacacaaagtacagataatttatctaaaattgatgtagaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagcatgtatcttgcaaacacaaagtacagataatttatctaaaattgatgtagaaat 320

                                                                       
Query: 121 aagcctcaagttctacattgaggtgatagaatactaatgtaagcacagtagccagagggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcctcaagttctacattgaggtgatagaatactaatgtaagcacagtagccagagggc 380

                                                                       
Query: 181 tactcccatgaaaacagaaactttgtgtcatttatattgactcacatggaatgctctgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactcccatgaaaacagaaactttgtgtcatttatattgactcacatggaatgctctgct 440

                                                                       
Query: 241 actctgattcttgcaactctaggctgttataaaaacagaccatcagaatatgtttttcaa 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actccgattcttgcaactctaggctgttataaaaacagaccatcagaatatgtttttcaa 500

                                                                       
Query: 301 ggaaaagtgctgcagagactggggtcttttttcttaaatgtcattgaatgagcaatagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaaaagtgctgcagagactggggtcttttttcttaaatgtcattgaatgagcaatagct 560

                                                                       
Query: 361 ggagcagttgtcaagggctggcttcctgcatcacaagggaaaggaggtgatgtaaagatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagcagttgtcaagggctggcttcctgcatcacaagggaaaggaggtgatgtaaagatt 620

                                                            
Query: 421 cagttggattcagctgttatcatgctctaggatctggcagtttctctga 469
           ||||||| |||||||||||||||||||||| ||||||  ||||||||||
Sbjct: 621 cagttgggttcagctgttatcatgctctagaatctggtggtttctctga 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no261_j17.g1 MSMg01no261_j17.g1 CHROMAT_FILE:
MSMg01no261_j17.g1 PHD_FILE: MSMg01no261_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:02 2005
         (555 letters)



>mm_chr14_54703601_54704555
          Length = 955

 Score = 1067 bits (552), Expect = 0.0
 Identities = 554/555 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagccagtcccgatggcattatatgcctcccccaagacactgtacttctccattggtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 acagccagtcccgatggcattatatgcctcccccaagacactgtacttctccattggtcc 704

                                                                       
Query: 61  ctccgggttctcttatggtccctactattgagaaggaagggctctgtgtcccagaaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctccgggttctcttatggtccctactattgagaaggaagggctctgtgtcccagaaacac 644

                                                                       
Query: 121 caaggcctgggaaaatcccggaagttttgcatagttctttaataagagtaataagtaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 caaggcctgggaaaatcccggaagttttgcatagttctttaataagagtaataagtaaaa 584

                                                                       
Query: 181 ggagtggttgttacagaaagaaagagagaaagaaagaaagaacttcccttccctctttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ggagtggttgttacagaaagaaagagagaaagaaagaaagaacttcccttccctctttgc 524

                                                                       
Query: 241 tctccttaattctttatcttctcaaagagtatcaccactaccacgttaggtggtgtgtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tctccttaattctttatcttctcaaagagtatcaccactaccacgttaggtggtgtgtct 464

                                                                       
Query: 301 tgagatgaggatgatagctgaatttacaaaatctctaagctgctgggtgtggtaggccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgagatgaggatgatagctgaatttacaaaatctctaagctgctgggtgtggtaggccac 404

                                                                       
Query: 361 actttcaatctcagggctggaaatgaagcaggtgaatctccacgaatttgaggccaggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 actttcaatctcagggctggaaatgaagcaggtgaatctccacgaatttgaggccaggct 344

                                                                       
Query: 421 ggagtttccagtcagccgggactgcaccgtgagaccctgcctcanagccaaaacgaagta 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 343 ggagtttccagtcagccgggactgcaccgtgagaccctgcctcaaagccaaaacgaagta 284

                                                                       
Query: 481 aagcaaaacaacaaaacctctaagcttttcttgacagggaactagctgcatcctgtgggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aagcaaaacaacaaaacctctaagcttttcttgacagggaactagctgcatcctgtgggt 224

                          
Query: 541 acagagtccccacga 555
           |||||||||||||||
Sbjct: 223 acagagtccccacga 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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