BAC Information

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BAC

Clone NameMSMg01-261M01
Chromosome14 (Build37)
Map Location 22,139,792 - 22,140,500
singlet/doubletsinglet
Overlap geneAdk
Upstream geneEcd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1
Downstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261M01.T7 (MSMg01no261_m01.b1)MSMg01-261M01.TJ (MSMg01no261_m01.g1)
ACCAG404046AG404047
length7551,007
length of high quality
(start - end)		713 (43 - 755)---
definitionCHROMAT_FILE: MSMg01no261_m01.b1 PHD_FILE: MSMg01no261_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:12 2005CHROMAT_FILE: MSMg01no261_m01.g1 PHD_FILE: MSMg01no261_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGCACTTATATTCATAAGGTTTATCTTACACATGGTTAACAATTTTAT
AAAGATTGATTCTACAAGCTAGTAACATTATATTATGTCTTAGTATTGAT
TATTTAGCAATATTTTCACACCTAGGAGACAAAACTGTAAGCTGCTATAT
GACTACATGTCATGTTGAACAACTTTTTCTTGTCTTTTGTTTGTGAATCC
TGTTCATTTGCATTTATTTCAACAAATATTCATGTAGTAAAGCCTATTAT
GGCAAATCAGTAACTAATAGAAGCCAAGTCCCTTGTAAGGTCTGTCATTA
TACGAACTATAGACTAAAGGTGGCTTCAGAGCGATCCAATGTGTTGGCAT
TTTATGAAGCAGTCTTTAAAGGACTTCTGATGAGTGCACAGCTACGGAGT
GTGCTACTCGATGTGCGCTCTGCGCTTTGGTGGTGCGGTTGGATGAAGCT
GCGTTTGCATATAATACAGAGTCAAACAATGCAGCACCTTCATGATACCA
AGGAAGCTGGGTGTCAGAATCAGGTGGTTTAAGTGGTAATCAGCCAGAGA
TATCAGCTAAGATGATGCAGTTTAATAGGGATAATAAAGATGATATTGTA
TTCGATTACAAAGTGCAAGTAGATTAATGTTTCACCTTTTGAACATATTA
CCATTGTTCTCCTTGAATACTTTAGTAATAAGAATAAATTATCTCTGGTT
CTTAA

AAAACATGAGAATGTCTNCCTTGTTGAANTTTTNNCATCATGCAGGGGGG
GGGNTNTTNNNTAGTTTCCCGAAAAAAAAAGGATTTTTTGAAGAGAAAGT
TGTGTTTTGAGAAGAGAAAGAGGGAGTTGGCCCTGATAGATAGGTTGGGT
GTTATGGCGCTGTTTACGAGCAATTAAATGGAAAAGGGAAAAAAATAATT
TCCCCCTGCGCCTCTGTCCCTACTATGAGGTTAGATTATACTATATATAT
ATGGGGGAGGTAGAAAAATAGATGAAGTGGTTCTTAAAAGAATTATATTG
AGTTATGTAAGGAGTAGTAGAGGTCATTTTACCGTCTCGGGCCCGGCCGT
CTACCCCAGAGCGGCGATTTTTTTTTTTTATTGGTAGGGGGTGGCTGGTG
ATTATTTTGTTGTAGGGTAGGTGAAAATTAGAGAAAATGATGTTTGAGAA
TGTGTGGGCCGTGCCTTTTTGAATTATATGCTTTAATAAGAAAGGAAGGT
TTGCGAATATAATTTCTCGCCCCCAAAAAACGGGGGGGTTTATTTGAGAT
AAGGTAAGATTGTTAATTGAGATGGATTTTGTATAGAAGGGAATTAGATA
AATTATAAGCATTATTTTAGTGTAGATAGGGGGAGGGGTGATAGGGTTAT
ATTGGTGAGATAAATAGTATAAAAATGAGGTTTAAGATGTGTATAGTTGG
CTTTAGAAAACGGATGTTATGACGAATTTATTAGTAATTTAACAGGACGG
AGTAATGTTTTATTTGAGCCGATATAGCGTGATATTGTTGATTTGTGGTG
TAGGCCCGGGGTTTGTAAAGTGGGCACAAGGCATGGGGAGTATAGCGCGG
GCAGTGTTTATGTGGGTATTATTCTGTCCCCGTCGTACTATGATATATTC
TTTTATTAGAATAACCCGAATACTTATTTACGATAATTCAGTATTATTAT
TTTAACTCACGGTGTTTTAGTTTGTATGGATTTGTTCTGATAGATACATA
GTAAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_m01.b1 MSMg01no261_m01.b1 CHROMAT_FILE:
MSMg01no261_m01.b1 PHD_FILE: MSMg01no261_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:12 2005
         (713 letters)



>mm_chr14_22139588_22140700
          Length = 1113

 Score = 1208 bits (625), Expect = 0.0
 Identities = 688/709 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcacttatattcataaggtttatcttacacatggttaacaattttataaagat 64
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcacttataatgataaggtttatcttacacatggttaacaattttataaagat 264

                                                                       
Query: 65  tgattctacaagctagtaacattatattatgtcttagtattgattatttagcaatatttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgattctacaagctagtaacattatattatgtcttagtattgattatttagcaatatttt 324

                                                                       
Query: 125 cacacctaggagacaaaactgtaagctgctatatgactacatgtcatgttgaacaacttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacacctaggagacaaaactgtaagctgctatatgactacatgtcatgttgaacaacttt 384

                                                                       
Query: 185 ttcttgtcttttgtttgtgaatcctgttcatttgcatttatttcaacaaatattcatgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcttgtcttttgtttgtgaatcctgttcatttgcatttatttcaacaaatattcatgta 444

                                                                       
Query: 245 gtaaagcctattatggcaaatcagtaactaatagaagccaagtcccttgtaaggtctgtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtaaagcctattatggcaaatcagtaactaatagaagccaagtcccttgtaaggtctgtc 504

                                                                       
Query: 305 attatacgaactatagactaaaggtggcttcagagcgatccaatgtgttggcattttatg 364
           |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 attatatgaactatagactaaaggtggcttcagagcgatccaatgtgttggtattttatg 564

                                                                       
Query: 365 aagcagtctttaaaggacttctgatgagtgcacagctacggagtgtgctactcgatgtgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 565 aagcagtctttaaaggacttctgatgagtgcacagctacggagtgtgctactcaatgtgt 624

                                                                       
Query: 425 gctctgcgctttggtggtgcggttggatgaagctgcgtttgcatataatacagagtcaaa 484
           |||||||||||| |||||||||||||||| |||||| ||||||||||||||| |||||||
Sbjct: 625 gctctgcgctttagtggtgcggttggatgcagctgcatttgcatataatacaaagtcaaa 684

                                                                       
Query: 485 caatgcagcaccttcatgataccaaggaagctgggtgtcagaatcaggtggtttaagtgg 544
           || |||||| |||| ||||||||||| ||||||| ||||||| |||| ||||||||||||
Sbjct: 685 cagtgcagcgccttaatgataccaagtaagctggatgtcagagtcagatggtttaagtgg 744

                                                                       
Query: 545 taatcagccagagatatcagctaagatgatgcagtttaatagggataataaagatgatat 604
           |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taatcagctagaaatatcggctaagatgatgcagtttaatagggataataaagatgatat 804

                                                                       
Query: 605 tgtattcgattacaaagtgcaagtagattaatgtttcaccttttgaacatattaccattg 664
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 805 tgtattcgattacaaagtgcaagtagattaatgttttaccttttgaacatattaccattg 864

                                                            
Query: 665 ttctccttgaatactttagtaataagaataaattatctctggttcttaa 713
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ttctccttgaatactttagtaataagaataaattatctctggttcttaa 913


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space:   775409
Effective search space used:   775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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