BAC Information

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BAC

Clone NameMSMg01-262I09
Chromosome14 (Build37)
Map Location 123,279,737 - 123,280,170
singlet/doubletsinglet
Overlap genePcca
Upstream genePhgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, Clybl, 1700108J01Rik, EG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847
Downstream geneBC006662, 4930594M22Rik, Tmtc4, Vgcnl1, Itgbl1, LOC668700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262I09.T7 (MSMg01no262_i09.b1)MSMg01-262I09.TJ (MSMg01no262_i09.g1)
ACCAG404601AG404602
length788749
length of high quality
(start - end)
353 (46 - 398)434 (73 - 506)
definitionCHROMAT_FILE: MSMg01no262_i09.b1 PHD_FILE: MSMg01no262_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:12 2005CHROMAT_FILE: MSMg01no262_i09.g1 PHD_FILE: MSMg01no262_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGGATCCGCGGA
ATTCTCTGTTTAGTTCTGTACCCCACTTTTTAATTAGGTCATTTGGGTCT
AACTTCTTGAGTTCTTTGTAAAATTTGGATATTAGCCCTTTGGCAAATGT
AGGGTTGTTAAAGATCTTTTCCCAATCCGTAGGCTATTTGTTCTATTGAC
ATGTTTTTTGCCTTACAGAAGTTTTGCAGTTTCATGAGGTCCTGTTTATC
AATTGCTGGTCTTCGAGCATGAACCATTGATGATCTGTTTAGGAAATTGT
CTCCTGTTCCAAAACGTTCAAGGTTATTTCCCGCTTTCTCTTCCATGAAA
TTTAGTGTATCCAGTTTTATGTTGAGGTCCTTGATCCACTTGGACTTGAG
TTTCATGCAAATTGATTAAGTACCCCCCCATCTTCATTCTTTTATTTGTA
TACTTCCAGTTATTCTTGCACTATTTGTTGAATATGCTTTTTTTTTTCTC
CCATTGTTTTCATCTTTGGCCTCTTCTTTATAATATCATCCGTTCTGTCA
TTATTTATTTATTTTCCTCACTCATATGTTGTTTTATTTTATTGCCAGAC
TCTCCTTATTTTTATCTAGTTTATTTTTATTACTTCTTTTTTACTTTATA
TATTTCCTATTTTCCCTCTTTTATTTCCCCATCTCATTAACTTACTGAAT
TTTCTATACATTCTCCCCTTGCTATTTTGTCTCCCCTCTCTCTCTAATAT
TTCTATCTCCACCTACTTACATTCGTCCTTGTTTTATA
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTTTGCGGTTTGGGTTCAAAACTGGCG
TCTCCTCAAACTGCTTAAAAAGTCACTGCTATAAAATATGTAAATTAATT
ATTGCCACCATTTTCTGATTGTAAATCAGGGCATCCATAAATTGAAAATC
TATCCAACAGCCAGCCTGGCTCTTCTGCAAGAGAAAGGCAGAAATGAATG
TTGGGCTACAGGAAGCACCAGAACACAGGTACTCCAATGCCCAACCTATC
CCTTTCATTTAGCATGCCTAAATGCTTCCGAGGTTTCAAAGCTGGTTCTT
ATAGCAGTGAAAAAGACATCTGCCAAGTTCATGTGTGCCTTCCCCAGATT
GGCTATGGACCCCACTGTACGAGCTTTGATAACAACAGGAGGCAGCAACT
GAAGGTCTGCAGCAGACACCTGTATCTTTTGTCGCTTGGACCATGGTCAC
TCACCTGCCTGGTAATTCTCCCTAATAGAATCACAGACGAGGAATAAAAG
ACCTAGTAACAAAAGACCGTGTTGAATCCTGTTGTTCATTCTCATTGCTG
TTTTCGCCTCCTGTCTTAACGCCTGTTCCATATTGACATGCCTCCTTAAT
TCCATTTGCCAGTTCCCAATCTCATCCCCCCTTATTAAACCGCCTCATCA
TTAAATTCTATTATTCTACCCCGATATGCATATGTTATCATTCCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_i09.g1 MSMg01no262_i09.g1 CHROMAT_FILE:
MSMg01no262_i09.g1 PHD_FILE: MSMg01no262_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:12 2005
         (434 letters)



>mm_chr14_123279537_123280370
          Length = 834

 Score =  793 bits (410), Expect = 0.0
 Identities = 428/434 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttgcggtttgggttcaaaactggcgtctcctcaaactgcttaaaaagtcactgctat 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 agtttgcagtttgggttcaaaactggcgtctcctcaaactgcttaaaaagtcactgctat 575

                                                                       
Query: 61  aaaatatgtaaattaattattgccaccattttctgattgtaaatcagggcatccataaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aaaatatgtaaattaattattgccaccattttctgattgtaaatcagggcatccataaat 515

                                                                       
Query: 121 tgaaaatctatccaacagccagcctggctcttctgcaagagaaaggcagaaatgaatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgaaaatctatccaacagccagcctggctcttctgcaagagaaaggcagaaatgaatgtt 455

                                                                       
Query: 181 gggctacaggaagcaccagaacacaggtactccaatgcccaacctatccctttcatttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gggctacaggaagcaccagaacacaggtactccaatgcccaacctatccctttcatttag 395

                                                                       
Query: 241 catgcctaaatgcttccgaggtttcaaagctggttcttatagcagtgaaaaagacatctg 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 394 catgcctaaatgcttccgaggtttcaaagctggttcttagagcagtgaaaaagacatctg 335

                                                                       
Query: 301 ccaagttcatgtgtgccttccccagattggctatggaccccactgtacgagctttgataa 360
           ||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct: 334 ccaagttcatgtgtgccttccccagattggctacggactcaactgtacgagctttgataa 275

                                                                       
Query: 361 caacaggaggcagcaactgaaggtctgcagcagacacctgtatcttttgtcgcttggacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 274 caacaggaggcagcaactgaaggtctgcagcagacacctgtatcttttgtctcttggacc 215

                         
Query: 421 atggtcactcacct 434
           ||||||||||||||
Sbjct: 214 atggtcactcacct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)