BAC Information

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BAC

Clone NameMSMg01-262L14
Chromosome14 (Build37)
Map Location 64,646,207 - 64,798,882
singlet/doubletdoublet
Overlap geneRp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra
Upstream gene2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988, LOC432868, Blk, LOC668293, BC065085, Tdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik
Downstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262L14.T7 (MSMg01no262_l14.b1)MSMg01-262L14.TJ (MSMg01no262_l14.g1)
ACCAG404747AG404748
length743716
length of high quality
(start - end)
267 (47 - 313)413 (77 - 489)
definitionCHROMAT_FILE: MSMg01no262_l14.b1 PHD_FILE: MSMg01no262_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:26 2005CHROMAT_FILE: MSMg01no262_l14.g1 PHD_FILE: MSMg01no262_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,798,623 - 64,798,882)(64,646,207 - 64,646,619)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGG
AATTCAAACTGATACTTCCGATCCCAAGCCCTACAGTTTTCACTCAACTA
ATTTTAAGTCTCATCCACATCTCTTCTCTTCAAACCAAGAATCCTTGTTT
TAAAAAAACAAACAAACCACAGAATGGGAACATCCCATGATTATCACAAT
CATTTCAGAATAACAGTAATAGTATTGGCACCATCTAGGGCAACACTGAC
AGCACCACAATGTATTTGATGCTGTCATCCTCCCTCCTCCCATGTCCCGC
AGTTGTATTATGTTGGCAGTATTTTACCATACAGTCCACACATACTGTAT
CTCCCCCTTGTAGTTCTCCAGCCTTGCTTCCATGGATGGCACCATGGCTA
ACACTCACTTTCCATCTTTATGCCGATGCCCCTTCATTGTTCCAGCTGTC
CGAGAGAAATTTCCTAGTAAATTTCTATTGAAGGCTCACCTCATGGATAT
GATGTTCACTGAGTTCCTGTATGAAGATCCCCTAGTGTGCCCTTACCGGA
TAAATTTTTTGCCGATTAAAAAAACTGTTTCCACATTCACTTTTCAATCA
AAAATGATGAACATATTTTACATCAAACTATAGAGTTTAATTTTATTCAC
CAATTCCCTGTCATTTATACATAGAATTTATTTACAAAATATTTTTTTTG
TATTATTTTAAAACTAACCTTTAAACACCCAATATATTTTTTG
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCACTGTGTGGCTCCACCCACCAC
GCCACCCTCTCTCCAGACACTGCTTGTGCTGCTGCCTGTTCAGCAAGCAT
CACTATGCACTGAAGGATCTGTGCAAGAAGCTCCCTGCGGCAACTCGATG
CGCAGCAAGCGCTGTGTGCATGCCCCCCCCCACCACATACACACAATGAA
GCCGTGCAAGTCAGTCTCAGACCCAGAAATAGCGGGGAGTTGGTGGCTTT
GGGTGGGATTCAGCCTCAGTTCTTCTCATTTCTCCTATTGTCACCCACGG
GTCCTTCTAGAGTGGCTCCGCCCTTGTCTCTCTCGGCTCCCGTCCTTCCC
AGTAGCTCACTGCCTTGTTCTCTTCTCTCTTGCTCCACTGTGTGACAGGT
TGCTGGGGACCAAACGCCAAACAAAGTGCCATACACTCGAGGGGCAGGTC
TGGCGGTAAGCTGCGGCAGGTTTCCTTGACGTCAGAGAGGTCTGGCCTCA
CTGACCATCCAGCATCCGGTTCATCGAGCCTGGGCAGGCCCTGCTTTGGA
CAGGTGCCCTCAGGACATGCCTGTCCCACCTGGTTCCTTGGCGTCTGCTG
ATGACCTGTACAACACAATCTCCTTGATTGTACACCTCTCCCCGTCCTGT
TACCACAATAACTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_l14.b1 MSMg01no262_l14.b1 CHROMAT_FILE:
MSMg01no262_l14.b1 PHD_FILE: MSMg01no262_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:26 2005
         (267 letters)



>mm_chr14_64798420_64799086
          Length = 667

 Score =  464 bits (240), Expect = e-135
 Identities = 255/260 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcaaactgatacttccgatcccaagccctacagttttcactcaactaattttaagt 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gaattcaaactgatacttcagatcccaagccctacagttttcactcaactaattttaagt 404

                                                                       
Query: 64  ctcatccacatctcttctcttcaaaccaagaatccttgttttaaaaaaacaaacaaacca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctcatccacatctcttctcttcaaaccaagaatccttgttttaaaaaaacaaacaaacca 344

                                                                       
Query: 124 cagaatgggaacatcccatgattatcacaatcatttcagaataacagtaatagtattggc 183
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cagaatgggaacctcccacgattatcacaatcatttcagaataacagtaatagtattggc 284

                                                                       
Query: 184 accatctagggcaacactgacagcaccacaatgtatttgatgctgtcatcctccctcctc 243
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 283 accatctagggcaacactgacagcacctcaatgtatttgatgctgtcatcctccctcctc 224

                               
Query: 244 ccatgtcccgcagttgtatt 263
           ||||||||| ||||||||||
Sbjct: 223 ccatgtcccacagttgtatt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no262_l14.g1 MSMg01no262_l14.g1 CHROMAT_FILE:
MSMg01no262_l14.g1 PHD_FILE: MSMg01no262_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:26 2005
         (413 letters)



>mm_chr14_64646007_64646819
          Length = 813

 Score =  737 bits (381), Expect = 0.0
 Identities = 405/413 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccactgtgtggctccacccaccacgccaccctctctccagacactgcttgtgctgctgcc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ccactgtgtggctccacccaccatgccaccctctctccagacactgcttgtgctggtgcc 260

                                                                       
Query: 61  tgttcagcaagcatcactatgcactgaaggatctgtgcaagaagctccctgcggcaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttcagcaagcatcactatgcactgaaggatctgtgcaagaagctccctgcggcaactc 320

                                                                       
Query: 121 gatgcgcagcaagcgctgtgtgcatgcccccccccaccacatacacacaatgaagccgtg 180
           |||| |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 gatgtgcagaaagcactgtgtgcatgcccccccccaccacatacacacaatgaagctgtg 380

                                                                       
Query: 181 caagtcagtctcagacccagaaatagcggggagttggtggctttgggtgggattcagcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagtcagtctcagacccagaaatagcggggagttggtggctttgggtgggattcagcct 440

                                                                       
Query: 241 cagttcttctcatttctcctattgtcacccacgggtccttctagagtggctccgcccttg 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagttcttctcagttctcctattgtcacccacgggtccttctagagtggctccgcccttg 500

                                                                       
Query: 301 tctctctcggctcccgtccttcccagtagctcactgccttgttctcttctctcttgctcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctctctcggctcccgtccttcccagtagctcactgccttgttctcttctctcttgctcc 560

                                                                
Query: 361 actgtgtgacaggttgctggggaccaaacgccaaacaaagtgccatacactcg 413
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 actgtgtgacaggttgctggggaccaaacgccaaacaaagtgtcatacactcg 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)