BAC Information

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BAC

Clone NameMSMg01-263E03
Chromosome14 (Build37)
Map Location 45,499,075 - 45,499,229
singlet/doubletsinglet
Overlap genenone
Upstream geneEar10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr
Downstream genePtger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263E03.T7 (MSMg01no263_e03.b1)MSMg01-263E03.TJ (MSMg01no263_e03.g1)
ACCAG405132AG405133
length763745
length of high quality
(start - end)
159 (128 - 286)587 (76 - 662)
definitionCHROMAT_FILE: MSMg01no263_e03.b1 PHD_FILE: MSMg01no263_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:07 2005CHROMAT_FILE: MSMg01no263_e03.g1 PHD_FILE: MSMg01no263_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTAAATGAAGACTCCATGGAACAGTGGAAAAGCCTACAGGGACCAATG
AGGAGAAGGCAAAAATGTTTTGAGCTTTCAGTTTATTATATCTGGGGATA
CCAGGAGGACATTTAGATAAAGACTTTCCACTTCCTGTCAGCCCTAGGAC
TCCTATATTTCAAGTTCTGTAGACATTACCCCTGAACTGATCTTATGTGG
ATATATTATGGATTGGGCTGGATTCAATTAGCTTGTGTCAGGAAAGAGGT
GCCCCATCTAAGTTCGGAAATGTTGTTAGAGTTAGTGAAGCGCTTAGAAC
GAAGAGAGAGGTTTACATAATTCCCCCCCCCCCCCCACTCTAGTAACTAT
GTTTCTAACGTTGAATAAGCCCCCCCCCGAATAACAAAAAAATTCCGTTG
CCCGTCTCTTTTGATGTTACAGTTGAGTAACACTATTCTAGAATCAATCA
TGTTCCCTTTTGTGATTTAATGCTCTTTCCGATTATTTGCTTGTAAGCAA
TTAAATGCTTCCTCTCTATCTTTCCGTCTTTCTTTTTTAGTTTGTAGCTT
TGCTTGAGCCATTTGCTTTTATTTCGATCTCTAGACCTCTCCATTTCTAT
TCTTCTCCTTTATACTCTTAGACTTTTTTTACTTTTTTATTTTTATTTAC
TCTATTGTCTCTTATATGTACTTAATTATCCTAATCTTGTCCCTTTAATT
CCTTTATTCTTTG
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACGAGTGCACCAAACCTGTCATGTC
CAGCAGACACAGTTTTTTATCCTGTACTCCCCAACCACTGGCTTTTACAA
GTTTTCTGCACCTTCTATTGAGATAGTCACTGAGTCTCAGGGCATGTGTA
TGTGTGATATAGATGTCCCATTTACAGTTAACAACTTCGCTGACACATTC
CTCCCACTTTGACTAGTTGTGAATTTCCGTGTTAGTCACTTTTACTGCAC
ACACATATTTCTCTGATGAGGTATGTGAGTTGCACTAATCTATGGTAGAA
AGATAGGAGTTTATAGGGCAGTTTGAAACTATGCCCATTTAGCAGAATAA
TAGTAAGTAATAGGTTCACTCTTGGGGCTTATGAATTTCCAACCAGATTT
ACAGTAGCAGATATACATTTCCTTCCATGGGGGTAGACCTTAAATCCAAT
CAAAAGGAACTGATTGCTTCCATAACATGCCTGCCACTAATGTGGTATAG
CTGTATCTTGCTATGCTGATCATTTTTGCAGTCCGTGGGGTTCATAGAGG
TGCTAATCTGTCAAGGCCCATATTCCTCCAGCAGCCCACAAAGCACTATA
AAATCCAGCCACTAGGGAGGATGATCACTGGTTAGTACCAACTTGATCTC
TCCATATCCCATAACCAATCTGTGTGATGTCTTCAGCCAAAGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_e03.b1 MSMg01no263_e03.b1 CHROMAT_FILE:
MSMg01no263_e03.b1 PHD_FILE: MSMg01no263_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:07 2005
         (159 letters)



>mm_chr14_45498875_45499433
          Length = 559

 Score =  292 bits (151), Expect = 7e-84
 Identities = 154/155 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtttattatatctggggataccaggaggacatttagataaagactttccacttcctg 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tcagtttattatatctggggataccaggaggacattcagataaagactttccacttcctg 260

                                                                       
Query: 61  tcagccctaggactcctatatttcaagttctgtagacattacccctgaactgatcttatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagccctaggactcctatatttcaagttctgtagacattacccctgaactgatcttatg 320

                                              
Query: 121 tggatatattatggattgggctggattcaattagc 155
           |||||||||||||||||||||||||||||||||||
Sbjct: 321 tggatatattatggattgggctggattcaattagc 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)