BAC Information

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BAC

Clone NameMSMg01-263I06
Chromosome14 (Build37)
Map Location 89,237,208 - 89,237,711
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263I06.T7 (MSMg01no263_i06.b1)MSMg01-263I06.TJ (MSMg01no263_i06.g1)
ACCAG405315AG405316
length740765
length of high quality
(start - end)		515 (49 - 563)284 (82 - 365)
definitionCHROMAT_FILE: MSMg01no263_i06.b1 PHD_FILE: MSMg01no263_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:27 2005CHROMAT_FILE: MSMg01no263_i06.g1 PHD_FILE: MSMg01no263_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATCCTCTTTCCGTATTTAGAAAATAAACAGGCTTCTACAGAA
TATTAAACTAAAATATATTATAGACCACATATTCATACATTGGAATAGGA
CAAAAGAAACAAACAAAAGGAGACAAAGAAAATGGTCAAGAAACACAGGC
ACAGAGACTCACTCATTCACAAACTTGGGAACTGATCAAAACCCCAAAAC
TGGAAGACAGGCTTTCCGGCTGTATCAGAGAAACAACTGATTCTGAGAAT
TGTATGTGAGAAGCCATCTTGGAATGCATGTTTCCTGTAGGTAAGTTATA
AGCAATATATTTTTTTTAAGTTTCAGTTTTGCTTATTCCTGAAACAGACT
TTACATTCTAGCATGGAGACTCCTGACCCTTGATTAAGTACAAGCTGCTG
ATGTAGTCTGGGTTAGTCACTTTCTTACTTATACACACACTAAAGATAGT
GAGGAGCCGACTAGTTCTAAGGAATAGTTCATGAATATGGGAAGGGGATT
TGAAGGGAGCCTGAGAGGAGAGAAAAGAGGATCGAGAGAATATAAACTGT
CAGGGCTAGGGTAATAAAAATGAAGTATGAAATTGTCTAACTTCTTTATA
AGGAATTATTTTCATATTATTTGTGGTTCTCACTTTGCGTATATTATTTA
TGGTACATACACACATTTTCATCTATCCTCTTTATTATTC

NNTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACC
ATCATCATGAGATATGCTTTTAAATCCAGCTCTACCTTTTCACGTGTGTT
AGGGTGTCCTGGACTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTG
AGTGGTCCTGGTTTCTGTTAGTAGGATTCTTACGTTTACCTTTTGCCATC
TGGCAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTT
CCTCTGTTGATTTTGTTACCCTCAATCTTTAGGAGTGGGAGACAAGCTCT
CTCCTCTGAGTTTCTTTTTTTTTTTCCCCCCCCCCCCCCCAGCTCTCCTC
TTTCGGGGAAGGTGTATTGTCCCCCCCCCAAAAAAAAAAAAACCTGTTTG
AGGGGGTTGTTCCTTAATTGGATCTTTCCCAGAATCTGTGTTGCTTTGTC
TACTATTGTGCCCTTCCCCCTTATTTCCTATACGCCTTTACCTTTTCCTC
TTTGCCATTCTTTTTTTTCCTCTTCTTTTCCCGCCTTTCGCATCTCTCCT
TTCTTTTTTTTTTCCCCCCTTTTTTTTTTCTTTTCCCCGTTTTTCCCCTT
CCTTTTCTGTTTCCCTTCCTTTTCCCCCTTTTTTTTTTCTGCCCCTTTTT
TCTTTTTTCTCCGCTTTCCCCCTTTCCTTTTCCCCTTTTCCCTCTTCTCT
TTCTTCCTTCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_i06.b1 MSMg01no263_i06.b1 CHROMAT_FILE:
MSMg01no263_i06.b1 PHD_FILE: MSMg01no263_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:27 2005
         (515 letters)



>mm_chr14_89236797_89237711
          Length = 915

 Score =  944 bits (488), Expect = 0.0
 Identities = 500/504 (99%)
 Strand = Plus / Minus

                                                                       
Query: 12  tcctctttccgtatttagaaaataaacaggcttctacagaatattaaactaaaatatatt 71
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 tcctctttctgtatttagaaaataaacaggcttctacagaatattaaactaaaatatatt 856

                                                                       
Query: 72  atagaccacatattcatacattggaataggacaaaagaaacaaacaaaaggagacaaaga 131
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 atagaccaaatattcatacattggaataggacaaaagaaacaaacaaaaggagacaaaga 796

                                                                       
Query: 132 aaatggtcaagaaacacaggcacagagactcactcattcacaaacttgggaactgatcaa 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aaatggtcaagaaacacaggcacagagactcactcattcacaaacttgggaactgatcaa 736

                                                                       
Query: 192 aaccccaaaactggaagacaggctttccggctgtatcagagaaacaactgattctgagaa 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aaccccaaaactggaagacaggctttccggctgtatcagagaaacaactgattctgagaa 676

                                                                       
Query: 252 ttgtatgtgagaagccatcttggaatgcatgtttcctgtaggtaagttataagcaatata 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttgtatgtgagaagccatcttggaatgcatgtttcctgtaggtaagttataagcaatata 616

                                                                       
Query: 312 ttttttttaagtttcagttttgcttattcctgaaacagactttacattctagcatggaga 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttttttttaagtttcagttttgcttattcctgaaacagactttacattctagcatggaga 556

                                                                       
Query: 372 ctcctgacccttgattaagtacaagctgctgatgtagtctgggttagtcactttcttact 431
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cttttgacccttgattaagtacaagctgctgatgtagtctgggttagtcactttcttact 496

                                                                       
Query: 432 tatacacacactaaagatagtgaggagccgactagttctaaggaatagttcatgaatatg 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tatacacacactaaagatagtgaggagccgactagttctaaggaatagttcatgaatatg 436

                                   
Query: 492 ggaaggggatttgaagggagcctg 515
           ||||||||||||||||||||||||
Sbjct: 435 ggaaggggatttgaagggagcctg 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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