BAC Information

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BAC

Clone NameMSMg01-264A11
Chromosome14 (Build37)
Map Location 87,587,538 - 87,587,881
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311, Diap3
Downstream geneEG665324, Tdrd3, LOC100043317, LOC100043780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264A11.T7 (MSMg01no264_a11.b1)MSMg01-264A11.TJ (MSMg01no264_a11.g1)
ACCAG405689AG405690
length705703
length of high quality
(start - end)
345 (361 - 705)310 (7 - 316)
definitionCHROMAT_FILE: MSMg01no264_a11.b1 PHD_FILE: MSMg01no264_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:07 2005CHROMAT_FILE: MSMg01no264_a11.g1 PHD_FILE: MSMg01no264_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTAAATCCCAGAGAATCCGCGGAATTCTCAACATAGCTATACCG
AAGGGCTGAGAAGCATTTGAAAAAAAATGTTCAACATCCTTATTCTTTTC
GGAAATGCAAATCAAAACAACCTTTAGATTCCACCTCAAACCAGTCAGAA
TGGCTAGAATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGA
GAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACC
ACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATATTTTTAT
TGGAAGATCCAGCAATACCTCTCCTGGGCATATATCTTTTTTTATGTCCC
CCCTCCCCATAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTA
TAATAGACAGAAGCTGGAAAGAACCCAGATGTCCCTTAGCAGAGGAATGG
ATACAGAAAATGTGGTATCAATGAAGGACTACTCAGCTATTGAACACAAT
GAATTTATGAAATTCTTAGGCAAATGGATGTATCTGGAGGATATCATCCT
GAGTGAGATAACCCAATCACAAGAGGAGCTATTTTCAATAAAAAGAAAAA
ACTTCCAAGTAGAAAACCTACTTCATACTAATTCATACATATCAAGAACT
GTCAAGGCTTACTGGAAGATGCTTGAATGCTTATACATTATGTAACGTAC
TAACN
GGATCCGCGGAATTCCACTGTATCTGATATTGACATCTCAAGAACGACTT
TAATTTTAACTCTTCCGAAAGTTTTAGATGTGTCTCCTGAATGCAGAACA
AAGTATGAAGGTTCCTTTGGTCTGCGATGTGAAAAGTTTTTCTTTATATT
AGGTGGGTCATATTCATTTACATTTATTGACATGAAAGATGTGTCTGGCC
TTTGGTCTGTCGTATTGTTCTATCTAAGGACAGGTATTTTTTTCAAGTCT
TTCCACAGTAATCTGCTTCATGCATGTGTGGATTTTTATATTTAAGAAAG
TCTATATTTTTAATTCCCCATCCACCTTTATACCATTAATTCTATATAAA
AACCAATGATAATAATGGCATATTTTCTCTATGTTTTTGTCAGTTCCTTG
CCTGCTCTTTGAATCAATAAAATTGTATTTCTTAGTGTTGGTTAAATATT
CTTTTACTCCTACTATTTGCCTATCAACCTGAAATAATGTCTTGTAAAAT
TGTATTTCTGATATTATAGATGATACAATCACCATTTCTATCCCATATTC
TTCTAATTTATTATACAATCTTTCCCTAAATTAATTTGAGATAACATGCA
AAGTTCTTTTCTGTCACCCTGGTCCCTTTTGTAGTCGTAGAACACTCTTG
TTCTTGTTGTCTAAAATATTTAAACTCTTCTGTGCTTTTGGCTTCATTAT
GTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_a11.b1 MSMg01no264_a11.b1 CHROMAT_FILE:
MSMg01no264_a11.b1 PHD_FILE: MSMg01no264_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:07 2005
         (345 letters)



>mm_chr14_87587338_87588082
          Length = 745

 Score =  658 bits (340), Expect = 0.0
 Identities = 343/344 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggacacatgctccactatgttcatagcagccttatttataatagacagaagctggaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 aaggacacatgctccactatgttcatagcagccttatttataatagccagaagctggaaa 260

                                                                       
Query: 61  gaacccagatgtcccttagcagaggaatggatacagaaaatgtggtatcaatgaaggact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacccagatgtcccttagcagaggaatggatacagaaaatgtggtatcaatgaaggact 320

                                                                       
Query: 121 actcagctattgaacacaatgaatttatgaaattcttaggcaaatggatgtatctggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcagctattgaacacaatgaatttatgaaattcttaggcaaatggatgtatctggagg 380

                                                                       
Query: 181 atatcatcctgagtgagataacccaatcacaagaggagctattttcaataaaaagaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatcatcctgagtgagataacccaatcacaagaggagctattttcaataaaaagaaaaa 440

                                                                       
Query: 241 acttccaagtagaaaacctacttcatactaattcatacatatcaagaactgtcaaggctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttccaagtagaaaacctacttcatactaattcatacatatcaagaactgtcaaggctt 500

                                                       
Query: 301 actggaagatgcttgaatgcttatacattatgtaacgtactaac 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actggaagatgcttgaatgcttatacattatgtaacgtactaac 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)