Query= MSMg01no264_c16.b1 MSMg01no264_c16.b1 CHROMAT_FILE:
MSMg01no264_c16.b1 PHD_FILE: MSMg01no264_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:16 2005
(642 letters)
>mm_chr14_113972176_113973218
Length = 1043
Score = 1075 bits (556), Expect = 0.0
Identities = 626/660 (94%), Gaps = 23/660 (3%)
Strand = Plus / Plus
Query: 1 atacacatagttttcaatttctgagcaagaaactaacacgaacgcgatgc-------c-- 51
||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 189 atacacatagttttcaatttctgagcaagaaactaacacgaacgcgatggtttaaagcaa 248
Query: 52 ----ttaaagcaacatctctttgttttcaaaaagttgtttaggtaagaaatctagtggtc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tggtttaaagcaacatctctttgttttcaaaaagttgtttaggtaagaaatctagtggtc 308
Query: 108 ttagcaggtggtttgcttacatcctcaaaatttaaggtcaagatgtgaaccagggttggg 167
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 309 ttagcaggtggtttgcttacatcctcaaaagttaaggtcaagatgtgaaccagggttggg 368
Query: 168 ctcttatctgaggactta-gggaggaattgttttctaagctcttctttattgcttgtgtg 226
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctcttatctgagtacttaagggaggaattgttttctaagctcttctttattgcttgtgtg 428
Query: 227 cgtattgttctttgaaattcttacactacgattctcgtgcccttgttgtctatcactgta 286
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cgtatt-ttctttgaaattctgacactacgattctcgtgcccttgttgtctatcactgta 487
Query: 287 tttt---atcctctctgcacgaagaggtagttttcctgccttcttcccc-tctctttttt 342
|||||||||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 488 ----cgcatcctctctgtaggaagaggtagttttcctgccttcttccccctctctttttt 543
Query: 343 atttataatgaccaggaatgttcttctgatatacctcatcatacccagcctctgcaattg 402
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 544 atttataatgaccaggaatgttattctgatatacctcatcatacccagcctctgcaattg 603
Query: 403 tttagagaagtgttataaaatttaacataataactatgattagaataaatcattctgaat 462
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 604 tttagagaagtgttataaaatttaacataataactattattagaataaatcattctgaat 663
Query: 463 gatacctcttttgccatataaaatagcaaaacagtgggaataatactgatggtatccctt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 664 gatacctcttttgccatataaaatagcaaaacagtgggaataatactgatggtgtccctt 723
Query: 523 taaaattcttcctgccatagacaggtagtatcctgccatccaaggattacataatctttc 582
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 724 taaaattcttcctgccatagacaggtagtattctgccatccaaggattacataatctttc 783
Query: 583 cacatgcaaaatgttttaagttttcctgagactcatcccattgcagttttagttacaagt 642
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 784 cacatgcaaaatgttttaagttttcctgaggctcatcccattgcagttttagttacaagt 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1043
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1033
Effective search space: 652856
Effective search space used: 652856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no264_c16.g1 MSMg01no264_c16.g1 CHROMAT_FILE:
MSMg01no264_c16.g1 PHD_FILE: MSMg01no264_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:16 2005
(289 letters)
>mm_chr14_114114433_114115121
Length = 689
Score = 393 bits (203), Expect = e-114
Identities = 252/289 (87%), Gaps = 32/289 (11%)
Strand = Plus / Minus
Query: 1 attccattaatccttcttctcttttttatatatttattatcattgttattaccttattat 60
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 332 attccattaatccttcttctcttttttatatatttattataattgttattatattattat 273
Query: 61 aatattaacataatagacaatgtgttttgataatatatagatcatttctccatctctatc 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 272 aatattaacataatagacaatgtgttttgataatatatagattatttctccatctctatc 213
Query: 121 tagatccaccccatttatttatttatttatttatttatttatttatttatttatttattt 180
|||||||||||| ||||||||||||||||
Sbjct: 212 tagatccacccc--------------------------------atttatttatttattt 185
Query: 181 atttatttatttatttatttatttattgtcgttcaagatgtttgtattgtccaaatactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 atttatttatttatttatttatttattgtcgttcaagatgtttgtattgtccaaatactc 125
Query: 241 ttggacacatgattttgcactgggaattgactagcctgcaggtgttaat 289
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 124 ttggacacatgatcttgcactgggaattgactagcctgcaggtgttaat 76
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
