BAC Information

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BAC

Clone NameMSMg01-264C19
Chromosome14 (Build37)
Map Location 53,168,815 - 53,169,461
singlet/doubletsinglet
Overlap genenone
Upstream geneEG638695, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692
Downstream geneLOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264C19.T7 (MSMg01no264_c19.b1)MSMg01-264C19.TJ (MSMg01no264_c19.g1)
ACCAG405795AG405796
length693751
length of high quality
(start - end)		647 (47 - 693)660 (76 - 735)
definitionCHROMAT_FILE: MSMg01no264_c19.b1 PHD_FILE: MSMg01no264_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:17 2005CHROMAT_FILE: MSMg01no264_c19.g1 PHD_FILE: MSMg01no264_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTTATACAAGAAATCCGCGGAATTCTGTGCTTAACAATCTGACC
CTATGCTTCCGAACTAGGAGAAAAAGAAATTTTTAACTACTGCTCCCATT
CATTTTATGTTATGGATCTATTTAAATTATTTATTTCATCTTGACTTGTT
TTATTGGTTTGGTTGTTTGAGACAGAACCTCATTTAGGGGTCCTTGACTA
CTCACCATGCAGACCAGGATGACCTTGAATTTATAGAAATCTGCCTGCCT
CTGAATTTCCTCAATATCTGTTATGTCTCTATTTTCATCTTTTTTTTTAT
TGAATTGTATTCTCTCTATCTTTCTTTTGATTATCTTGACTACCGGCTTA
TCAGTCACCTTTTAATTTTTTTCTCTGGATTTTCTGAGACAGGGTTTCTT
TGTATAGCCCTGGCTATCCTGGAACTCATTCTGTAAACCAGGCTGGCCTC
TGCCTACCATGTGATACTCCATTTGAAAGAATAGTTCTTTGCATTAAAAC
CCAGTACTTCTAAAACTATATTTTTTATTCATCCACTACTTTTCTCCTTT
CCATATGCATTCTCTAAGATTCTGCTTCCAGTCTTAAACTTTTCTTCTTT
TTCAAGTGGCACTACTTGTATTTTTGATCATCATTTCTATCTTGTATTAA
CATATATTCTGAGGAAATATGTAAATCTTTTATTTTTACTTTN

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCTGGTGCAGGATTTTTACTAGGC
CCAGAGGAATAGCATAATCATGTACTTACTAAAGGACCCCTGGTGGTGGA
TTTAACAATAGACTAGCATTGTATCAGAGCATTCACCTGGCTCCTGTGTT
TAGCTGATCTTAATTAGGATTGTTCCTTTTCTCAGTTGTAAACAAGGCCT
GGCTCCTGCCATCTTTTTATGTGTACATTTTCTTTGTTTTGTGTTAAGTA
CCTTGATGGATGTATTTGCCTAGCCTTCTTGCTTTTCTTCTGTATTAAAA
GCCTGGTGTTTGCTTGTATAAAATACATTCAGATACAGCACTCCCTTGTG
TTGTGTCCATTTGTCACCCTTTTCTTGCCAACTCCATGCTCGCCTGTAAG
GGGAACCCCAAATTTTTTCCGAGGATTGAGGGAGGCCAACTGGGGCTGGT
CTGCGGCAAAACAAGTCTTGGAGAGATCAGGGATACAAGGTACATACCTA
AGCATAAAAGAAGCAATACATAGCAAACCAATAGCCAATATCAGATTAAA
TGGAGTGAAACTTTAAGCAATTCCACTAAAACCAAGGAAAAGTCAAGGCT
GCTTACACTTTCTGTATCTATTCAACATAGTACTTGAAGTTCTAGCTGGA
ATAATAAGACAATAAAAGTAGAAAGGAAGAAGTCAAAGAATCACTCTTTG
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_c19.b1 MSMg01no264_c19.b1 CHROMAT_FILE:
MSMg01no264_c19.b1 PHD_FILE: MSMg01no264_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:17 2005
         (647 letters)



>mm_chr14_53168705_53169751
          Length = 1047

 Score = 1189 bits (615), Expect = 0.0
 Identities = 639/647 (98%), Gaps = 1/647 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaccctatgcttccgaactaggagaaaaag-aaatttttaactactgctcccattcattt 59
           |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 757 gaccctatgcttccgaactaggagaaaaagtaaatttttaactactgctcctattcattt 698

                                                                       
Query: 60  tatgttatggatctatttaaattatttatttcatcttgacttgttttattggtttggttg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tatgttatggatctatttaaattatttatttcatcttgacttgttttattggtttggttg 638

                                                                       
Query: 120 tttgagacagaacctcatttaggggtccttgactactcaccatgcagaccaggatgacct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tttgagacagaacctcatttaggggtccttgactactcaccatgcagaccaggatgacct 578

                                                                       
Query: 180 tgaatttatagaaatctgcctgcctctgaatttcctcaatatctgttatgtctctatttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tgaatttatagaaatctgcctgcctctgaatttcctcaatatctgttatgtctctatttt 518

                                                                       
Query: 240 catctttttttttattgaattgtattctctctatctttcttttgattatcttgactaccg 299
           ||||| |  ||||||||||||||||||||||||||||||||||||||| ||||||||  |
Sbjct: 517 catctctaattttattgaattgtattctctctatctttcttttgattaacttgactaaag 458

                                                                       
Query: 300 gcttatcagtcaccttttaatttttttctctggattttctgagacagggtttctttgtat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gcttatcagtcaccttttaatttttttctctggattttctgagacagggtttctttgtat 398

                                                                       
Query: 360 agccctggctatcctggaactcattctgtaaaccaggctggcctctgcctaccatgtgat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agccctggctatcctggaactcattctgtaaaccaggctggcctctgcctaccatgtgat 338

                                                                       
Query: 420 actccatttgaaagaatagttctttgcattaaaacccagtacttctaaaactatattttt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 actccatttgaaagaatagttctttgcattaaaacccagtacttctaaaactatattttt 278

                                                                       
Query: 480 tattcatccactacttttctcctttccatatgcattctctaagattctgcttccagtctt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tattcatccactacttttctcctttccatatgcattctctaagattctgcttccagtctt 218

                                                                       
Query: 540 aaacttttcttctttttcaagtggcactacttgtatttttgatcatcatttctatcttgt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aaacttttcttctttttcaagtggcactacttgtatttttgatcatcatttctatcttgt 158

                                                          
Query: 600 attaacatatattctgaggaaatatgtaaatcttttatttttacttt 646
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 attaacatatattctgaggaaatatgtaaatcttttatttttacttt 111


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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