BAC Information

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BAC

Clone NameMSMg01-264O20
Chromosome14 (Build37)
Map Location 38,841,510 - 38,841,798
singlet/doubletsinglet
Overlap genenone
Upstream geneRgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm, LOC382871, LOC382872
Downstream geneNrg3, LOC100041521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264O20.T7 (MSMg01no264_o20.b1)MSMg01-264O20.TJ (MSMg01no264_o20.g1)
ACCAG406336AG406337
length734753
length of high quality
(start - end)
350 (383 - 732)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no264_o20.b1 PHD_FILE: MSMg01no264_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:15 2005CHROMAT_FILE: MSMg01no264_o20.g1 PHD_FILE: MSMg01no264_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTTAGCCCTGAGACCCATTTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCCTCTTAAGCCCTTTATATATATTGGATATTAATCCCCT
ATCTGATTTAAGTTAGATAAAGATACTTTCCCAATCTGTTGGTGGCCTTC
TTGTCTTATTGACTGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCTTG
AGGTCCCATTTGTCAATCCTCGATGTTACAGCACAAGCCATTGCTGTTCT
ATTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAATTTCAGCCCCTATCGNCCACGTGAAGTTCCTTGATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAAGAATGGATTAATTCACATTC
TTCTACATGATAGCAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTG
TCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTGGAAGATCAAGTGACC
ATAGGTGTGTGGGTTCATTTCTGGGACTTCAATTCTATTCCATTTGTCTA
CTTGTCAGTCACTATACCAGTACCATGACGTTTTTATCACAGTTGCTCTG
TAGTACAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATC
CTTGAGAAGAGATTTTGCTCCCCTTTTTTTATTN
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAATACCTGTCAATTTACCTT
TGTTCAGTGGATCTCAACATGCCAAATACAGAGGAAAAAATGGAGCAGTG
AAATTTTAACGTAGACAGACACAATGAAGAGGAAAGAGATCATCTATGTA
TTATATAGTTGCTTTCAGATACTCTGAAATTTCAGCTGACTATTGAAGCT
TGAAATATTAAAACGAATGGCAGTCCCTGTGCTATACCCAGGTACTCTCT
GTCCATCCAACCCTGCTCCCTCCACTGCTAGTCCCATACGACTGATCACA
GTCTTCCCACCTCTGGTTGTTTCGCCCCCCACCCCCTAGTTCCTTCTCAG
TCATAAACCCCTTGTGGTCAGCAGTCCCAAATTCCAGTAGCTCAGTAGAT
CAAAACTCTTGAAACTTATAATTCATCAGTCAGATTTATATACCAATAAA
TTCTCAATTTACAAGGTGCCCACACAGTAATTTCAGAGTCAAGTGATAAT
GATAGAAACTGCCCACCTAGATTAGACAAGTTATTTCAATTATTCTATAT
TTATAGATACCTGTGGCTATTTAAAGCCACGTGCAATAGGGATCATCTTC
CTCTTGCTCAATCTTTCCTCATTCTCCCTCCTGTCTCCTCTGTCTCCGTC
TCTGCAATTCTTCTCTCTGCCTCCCCTTTCCCTGTCTAATCAAGATTTCT
TGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_o20.g1 MSMg01no264_o20.g1 CHROMAT_FILE:
MSMg01no264_o20.g1 PHD_FILE: MSMg01no264_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:15 2005
         (289 letters)



>mm_chr14_38841424_38842112
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaaatacctgtcaatttacctttgttcagtggatctcaacatgccaaatacagaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agtaaatacctgtcaatttacctttgttcagtggatctcaacatgccaaatacagaggaa 316

                                                                       
Query: 61  aaaatggagcagtgaaattttaacgtagacagacacaatgaagaggaaagagatcatcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aaaatggagcagtgaaattttaacgtagacagacacaatgaagaggaaagagatcatcta 256

                                                                       
Query: 121 tgtattatatagttgctttcagatactctgaaatttcagctgactattgaagcttgaaat 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgtattacatagttgctttcagatactctgaaatttcagctgactattgaagcttgaaat 196

                                                                       
Query: 181 attaaaacgaatggcagtccctgtgctatacccaggtactctctgtccatccaaccctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 attaaaacgaatggcagtccctgtgctatacccaggtactctctgtccatccaaccctgc 136

                                                            
Query: 241 tccctccactgctagtcccatacgactgatcacagtcttcccacctctg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tccctccactgctagtcccatacgactgatcacagtcttcccacctctg 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)