BAC Information

Click to search

BAC

Clone NameMSMg01-265C16
Chromosome14 (Build37)
Map Location 92,240,725 - 92,240,913
singlet/doubletsinglet
Overlap genenone
Upstream geneEG639558
Downstream geneEG665377, LOC638252
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265C16.T7 (MSMg01no265_c16.b1)MSMg01-265C16.TJ (MSMg01no265_c16.g1)
ACCAG406509AG406510
length730759
length of high quality
(start - end)
189 (107 - 295)293 (73 - 365)
definitionCHROMAT_FILE: MSMg01no265_c16.b1 PHD_FILE: MSMg01no265_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:35 2005CHROMAT_FILE: MSMg01no265_c16.g1 PHD_FILE: MSMg01no265_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATAGTTCGAGAATCCGCGGAATTCCCATAATTTTTTCCATCCTGATT
TATGCAACCAACTTTCTCTACAACTTCTATGAATATTTTGTATTTTATCC
GTAGACAGCTTATTTCTGCAACCAGAATCCAGTTTTATTGGCTATTTCAG
ATCTATCTTTGTCTGTTTTCAAGCATCTTATTAGTTTCATTTTAGTTTAG
TGATACAAACTCCCTTAGTTGATGTCTTAGTAACTTTTTTATTGCTGTGA
TAAAGGTCATGACCAAAAGTAACTTGTAAAGAAAAGAATTTATTTCTTTT
CTCTTTTAGTCTATCACCCGAGAAAATCAGGGCAGATTCNCATGAATTCC
NNAACCGAGACACCTTGATGAAATATAAGGTTGGTGTCTTAGCATTTCAA
TACAAAGGAGNCACACCATGGCCGAGGGATTTCTTATAAAGGGATACCTT
TAATTGTGTCTGGCTTACAGTTTCAGAGATTCATTCCAATATCATCATGA
CAGGAAGCATAGCAGTGTTCAGGCAGACATGGTGCTAGAGGAGCCAAGAG
GTCTACATCTTGATTTATAGACAGCCAATAAAAAAAAAAAAAAAAAAGGA
TTGTGTTTGGCACGTATTCAATAATAAGCTCCCTTCTATATTAGTAGTCC
TCAAAGCCTGCCTATAGAGAGAAACTTTTCCTCCCCACAGGTTCAGATTT
ATGGCCACATGCCCTCACTTCTTACCAGAG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTA
ATGGGGTTGTTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATAT
GTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCC
AATCTGTTGGTGGTCTCTTTGTCTTATTGAAGGTGTCTTTTGCCTTGCAG
AAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGC
ACAAGCCATTGCTGTTCTGTTCTTTAATTTTTCCCCTGTGCCCATATCTT
CAAGGCTTTTCCCTACTTTCATCTCCACCCCCCCCCCCGTCTCTGGTTTT
ATGTGAAGTTCTTTGATCCATTTAGATTTGAACATATAAAACAAGGAGAT
AAGTATGGATCGATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCA
GCACCATTTGTTGAAAATGCTGTCTTTCTTCCACTAGATGGTTTTAGCTC
CCTTGTCGAAAATCAAGGGACCATAAGTGTGCGGGTTCATTTCTGGTTCT
TCATTTCTATTTCTTTGGTCTACTTGTCTGTCTCTATACCAGTACCATGC
AGTTTTTTACCCCATTTGCTCTGTTGTTAAGCTTTTGGCTCTTGCTGGTT
GATTCTACCCGAAGTTCTTTTATCCCCTGTGAAAAAGTTTTGCTATCCTA
AGTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_c16.b1 MSMg01no265_c16.b1 CHROMAT_FILE:
MSMg01no265_c16.b1 PHD_FILE: MSMg01no265_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:35 2005
         (189 letters)



>mm_chr14_92240598_92241186
          Length = 589

 Score =  358 bits (185), Expect = e-103
 Identities = 188/189 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcttatttctgcaaccagaatccagttttattggctatttcagatctatctttgtctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agcttatttctgcaaccagaatccagttttattggctatttcagatctatctttgtctgt 257

                                                                       
Query: 61  tttcaagcatcttattagtttcattttagtttagtgatacaaactcccttagttgatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tttcaagcatcttattagtttcattttagtttagtgatacaaactcccttagttgatgtc 197

                                                                       
Query: 121 ttagtaacttttttattgctgtgataaaggtcatgaccaaaagtaacttgtaaagaaaag 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ttagtaatttttttattgctgtgataaaggtcatgaccaaaagtaacttgtaaagaaaag 137

                    
Query: 181 aatttattt 189
           |||||||||
Sbjct: 136 aatttattt 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)