BAC Information

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BAC

Clone NameMSMg01-265C21
Chromosome14 (Build37)
Map Location 76,654,888 - 76,655,176
singlet/doubletsinglet
Overlap genenone
Upstream geneCpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik
Downstream geneTsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265C21.T7 (MSMg01no265_c21.b1)MSMg01-265C21.TJ (MSMg01no265_c21.g1)
ACCAG406519AG406520
length818738
length of high quality
(start - end)
114 (115 - 228)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no265_c21.b1 PHD_FILE: MSMg01no265_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:35 2005CHROMAT_FILE: MSMg01no265_c21.g1 PHD_FILE: MSMg01no265_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTGGANATATGTGGTTGATAAGTCTGGNATCCAGAGCAAAC
TTANCTNAAAGCCCAAGAGGATTTTGTTAAAGAGGTCATAGTTCTAGACT
TGTNTNANAAAAAAAGAAACATGGTTTAATGTGCGTGCGTGCATGTGTGT
GTGTGCGTTTTGTGTGTGTGTGCAGGCTTGCTTGTTTACCCCCTTTTTTG
CNNTTCNTAANACAGCCTTTNTGTTCTCCNCNTTTATCTGGGTTTTTGAG
GATTATACTCCATTTGCCTGNNNNATTTTTTTTTCCCTGTTCCCCACTGA
AAAGGTGTTAAAGAAAAGAGGAGTAAAGAGTAGACATAACGAAGGAAAGT
GTNNNNNNTNTTTTTGNNCCCTTTTTTTTTTCCCCCCCCCCCCCAAAGGG
TTCTTGGGTGTCCNNNNNAACTTGAAAAATAAAAACTCTANNNNNNNNTT
TANAATTTNTTNNCCTTTAANATGTCCCCCCTCTNNNNCCCCTTTTCCTT
TTTNTCANTTTTTTTTTTCCCCCCCCTTTTNNAAAACCCCCCTTTTTCCT
CTTTTTTNNTTTTTTTTCCCCTCNNNNTTTTTCCCCCCCCCNTTCNTNNN
NNTTTTTTTTTTTTTTCTTCTTTNNTCCCCCTTTTTTTTTTTTTTTTTTT
TTTCCCCTCTTTTTTTTTTTCTTTTTTCCCTTTTTTCTTNCCCCTCTTTT
TTTTTNNNTCTCCCCTTTTTCTTCTTTCTTTTCTCTTTTTTCTTTTTTCC
CTCCTCCGGGCGTACGAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACGGGTCGTGAGTGCGTCAGGCCTG
GCAGCCCGGGAGCTTGGACACATCGCAGTGGTGACCTGGTGCCACTCCAA
CCCAAACAGATTTGTCACAGCCGCACTGGCTTCCAGCGCAGCCAGAGCGG
CATTGTGTCTGACAAACCAGGCCTCTGTCAGGACAAAGGGGGCTCTCAGA
ACTCGCTCTGCCTTGGCTCCTTCACACCCAGAAAGAGCCAGGGGACCTCT
TTTGTCCGCCTGGGGGAAACAAAATCGATTCATTTCGGCTTCGCACCAGC
ACTGACTACATTCTTTTTTATCAGCCACCGCCCGGAGGCCTTGCGGCCAG
CTTTCCACAGCCCGGCTCACCCACAGCCTGCTGAGGGCCAGGGACTATTC
TAGGCACGGTCACCCGAGTTAATCCTCCCAACTAAGCTATGGTGAAGGGA
TTAGCTCCACTGTAGTCATGTGGAAACTGAGGCGGGGAGAGGGGGAAGGT
CACTCAGCTAGCGACCAAGGGAAGAGTCAGAATTGCTATGGCTATTCAGA
TGACCGAGCCCTAAATTGACTGCCGTTTCCCAAAATTTCCCGGTCTAAAC
ATCTCAAAAGGCCCCCCTGAAAACTCCTTTCTGTGGGCCACCCCTGGGCT
TGGGAACCGTTCTTGCAAGTGGTCCCCGGAAACCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_c21.g1 MSMg01no265_c21.g1 CHROMAT_FILE:
MSMg01no265_c21.g1 PHD_FILE: MSMg01no265_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:36 2005
         (289 letters)



>mm_chr14_76654688_76655376
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgggtcgtgagtgcgtcaggcctggcagcccgggagcttggacacatcgcagtggtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgggtcgtgagtgcgtcaggcctggcagcccgggagcttggacacatcgcagtggtgac 260

                                                                       
Query: 61  ctggtgccactccaacccaaacagatttgtcacagccgcactggcttccagcgcagccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtgccactccaacccaaacagatttgtcacagccgcactggcttccagcgcagccag 320

                                                                       
Query: 121 agcggcattgtgtctgacaaaccaggcctctgtcaggacaaagggggctctcagaactcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcggcattgtgtctgacaaaccaggcctctgtcaggacaaagggggctctcagaactcg 380

                                                                       
Query: 181 ctctgccttggctccttcacacccagaaagagccaggggacctcttttgtccgcctgggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctgccttggctccttcacacccagaaagagccaggggacctcttttgtccgcctgggg 440

                                                            
Query: 241 gaaacaaaatcgattcatttcggcttcgcaccagcactgactacattct 289
           ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaacaaaagcgattcatttcggcttcgcaccagcactgactacattct 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)