BAC Information

Click to search

BAC

Clone NameMSMg01-266I07
Chromosome14 (Build37)
Map Location 74,640,667 - 74,640,954
singlet/doubletsinglet
Overlap genenone
Upstream geneRb1, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578
Downstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266I07.T7 (MSMg01no266_i07.b1)MSMg01-266I07.TJ (MSMg01no266_i07.g1)
ACCAG407486AG407487
length774735
length of high quality
(start - end)
43 (508 - 550)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no266_i07.b1 PHD_FILE: MSMg01no266_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:19 2005CHROMAT_FILE: MSMg01no266_i07.g1 PHD_FILE: MSMg01no266_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCATTTTTTGGTGCGGGACATTCCCCTCCGTTCCNCCTCTTCCGNNNN
NATCTATAATTGCGGCCGCTAAAGAACACTAATTTCGCACCCGCNCGGAA
NNCCAGCGGGTAGCGGCACCGAAGNGAGGAAGNGANNNNAGANAAGGNAN
ANNAANNNAGGGAGAAGGACCCCCGGNGANGAAGANNNAAGNNANGNAGG
GGAGGNNNNNANNAGAAAAGGGAGGNNAGNGANNANNNGNAAGNNAGGGG
GGANNNNGGAAAGGNAGGGGANANANNNNNNANNNNAGNNANGGAANNGG
NAGTTGNNNNGANNNNGGANNNAGGNNNNNAGAANAGNAGGGNAANAAGN
NNNNANGGGNNAAGGGTTTTTTTTTTTTANGGANANNAGANAAANNNNNA
NNNANNNAAGTATTTTCACCCCCCACCCTCTAAGGACTCCAGCTTTTACT
CTAGGTGAAATAGGACTCGACTTATACTTTAAAACAAGGGTTCTCAACCT
GTGGGTCATGACCCCTTTGGGAGAAAAATGGGCCCTAGGTGACTGTCAGA
AAACACAGATACTTATATTATTACTCATAGCAATAATAAAGCTACAGTTT
TGAGGTAACAATGAAAATAATTCTATAGTTGGGGCCACCAAAACAAGACG
AGAAGCTATATTAAGAGGTTGCACCCCTAACAAGGCCGCACAACCGCTGC
CTTAATATTTTTTTTCTAGATGCGATTTATGTAATCCATGTATAGGAATC
AGGCGTGTAATACTATTATCTATG
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTGAATTCAGTCAGGAATTTG
TGTCATCTTTGATTTTATAGAACACTCTTAAGAGTCATTTTCAATTCATC
ACCATCACTGAAGGAGACTGAAAATGTGTGGCCTTCTGTAGGCTAGTCTG
TGGTTGTTTGAGACCCCATGCAGTCTTATGCCTGAACTGATTACTGCAGG
GGTATCCGTAGGTGCCTTACTTAAAACGAATCCCTCAAGAACCCTAAACA
AGGATCAGAAACACTTTAATAGGAAGTCTATGTAGGATCCTTTGAAACAT
TAAATATTGAACTGTTATTCATTCTCGCCTCTCCCCCCACTGACCTACTT
AATCTGCAGAAGTTAAACCTGCCACCACTTATCTACTTAACCCTGCCCTT
CGTGGACCACATAAAATTTTGGGTCCAAGCCTTCTCCATGCAGGTACTTT
ACTCATTAAAGCAAATACCAACAGTTAATTTTCTAGAAAAATACTCATGG
AATTTCATCTCTGTCCTGTTAGTACTGCCTTCCTAAGGTGTAATTTCTTC
TTCACCTTTCACCAGTCACCTATATTTGACATTTAGACATATAGACATAT
ATACATATAATGTGCGATATACATATAATATATATATGATACACACACAC
ACACACACATATATATATATATATATATATACATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_i07.g1 MSMg01no266_i07.g1 CHROMAT_FILE:
MSMg01no266_i07.g1 PHD_FILE: MSMg01no266_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:19 2005
         (292 letters)



>mm_chr14_74640467_74641158
          Length = 692

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttgaattcagtcaggaatttgtgtcatctttgattttatagaacactcttaagagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttgaattcagtcaggaatttgtgtcatctttgattttatagaacactcttaagagtc 260

                                                                       
Query: 61  attttcaattcatcaccatcactgaaggagactgaaaatgtgtggccttctgtaggctag 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 attttcaattcatcaccatcactgaaggagactgaaaatatgtggccttctgtaggctag 320

                                                                       
Query: 121 tctgtggttgtttgagaccccatgcagtcttatgcctgaactgattactgcaggggtatc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tctgtggttgtttgagaccccatgcagtcttatgtctgaactgattactgcaggggtatc 380

                                                                       
Query: 181 cgtaggtgccttacttaaaacgaatccctcaagaaccctaaacaaggatcagaaacactt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cataggtgccttacttaaaacgaatccctcaagaaccctaaacaaggatcagaaacactt 440

                                                           
Query: 241 taataggaagtctatgtaggatcctttgaaacattaaatattgaactg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taataggaagtctatgtaggatcctttgaaacattaaatattgaactg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)