BAC Information

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BAC

Clone NameMSMg01-266K19
Chromosome14 (Build37)
Map Location 113,080,290 - 113,080,582
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk5, LOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266K19.T7 (MSMg01no266_k19.b1)MSMg01-266K19.TJ (MSMg01no266_k19.g1)
ACCAG407596AG407597
length761762
length of high quality
(start - end)
322 (46 - 367)296 (77 - 372)
definitionCHROMAT_FILE: MSMg01no266_k19.b1 PHD_FILE: MSMg01no266_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:31 2005CHROMAT_FILE: MSMg01no266_k19.g1 PHD_FILE: MSMg01no266_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGCAGAGGAATCTAATAACCAAGAAACTTGTTCAGTACTTAGA
CATCAGGGAAACACGAATCGAAAGTGACTCAGGTTCTACCTTACACCCAT
CAGAATGGCTAATGTGAAAGGGGATCCTGCTTGCAACACCAATGGCTCAG
TCTCTAATATCAGTGCTTAATAAGTAGGACCTCATGAAATCCAAAAACTT
CTGTCAATCAAAGGCCACCATCAATAAGATGAATAACAGCCTAGAGATTT
GGTAAAGATTTTCATCAACTATCATCAAAAACATAAGGAACATCACATGC
TGACGAGCATATGGATTATTTTTAGCACTCCTTCCTTGTTGGTGGGAGTG
CAAACTTGTACAACCATTCCACAACACAATATGGAAGCTTCTCAGAAAAC
TGGGAGTAGTTCTACCTCAAGACTCAGCTGTATCTCTCCTGGGCATATAC
CCAAGAGATGCTCCAACATCCTACAAGGACACTTGGTCAAATATGTTCAT
AGTAGCTTTATTTCTAATGTCCAGAGACTGGAAAAAAAAACCTAAATGTC
CCTCAACTAAAGAATGGATAAAGAAAATATGGTTCATTTACACAATAAAG
TATTGCTCGTCTATTATAAAAAATGGCATCATGAATTTTGCATGCCAATG
TTGGGCCTTGAATTATTATCATTATCAATTTATTAGCTGTTGTCCATAGA
TTAGCATTGGA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCTGCAAAGCAAGCTGGGGTTGA
AGAATGAACAAGAAAAGGAGGAAGCTGGTCATCGGGTAAAAAAGTTACAG
AAAATTGGTAAAAGGGTTTTGTTTAACATTATCATATTCTGTCCTTCAAC
ATACACAGGAGATGAAATTGAAAATATTGCTCACTAGACAGTATTATCTT
TTTATTAATTTTAATTTTCTAGATAAGAATATAATTATAATTTTCCATCC
TTGCCTTTCCTCCTGCCAATTTTTCTTCTGTACCCTCTGGCTCTATTTAA
AGTTCATTGATTAGTTTTTTATTAATTGTCACCACCACCAAACACACATA
CACACACAAACACACACACACACACACACACACACACACACACATATACA
CACACACACTTCCAAATATGTGTCTAATGGTATTGTTCTTTTTAAGGTCC
TCCTTAAGAGTTGATATTGTCAAGAGTTTATGGAGATATCTTCCCTATAC
ATCCTCAAGACACAATTTTACAGGAAGCTCCTGTTTTCTGGCTCTTGCTT
TCTTCCTGCCCCTGCTTTCACATCTTAATTAATCATTTTGGTGCAGATGT
ACTACTGTTGATTCATCTGTCTAGATGGGACACCACACAATCTCCTATTC
TCTAACTTTTGATCCATTGTTGNTTTCTGTAATGTTTTCCTCCTACTGCA
CGAGACAGCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_k19.g1 MSMg01no266_k19.g1 CHROMAT_FILE:
MSMg01no266_k19.g1 PHD_FILE: MSMg01no266_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:31 2005
         (296 letters)



>mm_chr14_113080090_113080785
          Length = 696

 Score =  536 bits (277), Expect = e-157
 Identities = 289/293 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgcaaagcaagctggggttgaagaatgaacaagaaaaggaggaagctggtcatcggg 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctgcaaagcaagctgggtttgaagaatgaacaagaaaaggaggaagctggtcatcggg 260

                                                                       
Query: 61  taaaaaagttacagaaaattggtaaaagggttttgtttaacattatcatattctgtcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaaaagttacagaaaattggtaaaagggttttgtttaacattatcatattctgtcctt 320

                                                                       
Query: 121 caacatacacaggagatgaaattgaaaatattgctcactagacagtattatctttttatt 180
           ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 caacacacacaggagatgacattgaaaatattgctcactagacaatattatctttttatt 380

                                                                       
Query: 181 aattttaattttctagataagaatataattataattttccatccttgcctttcctcctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattttaattttctagataagaatataattataattttccatccttgcctttcctcctgc 440

                                                                
Query: 241 caatttttcttctgtaccctctggctctatttaaagttcattgattagttttt 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatttttcttctgtaccctctggctctatttaaagttcattgattagttttt 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)