BAC Information

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BAC

Clone NameMSMg01-267F12
Chromosome14 (Build37)
Map Location 73,657,105 - 73,819,945
singlet/doubletdoublet
Overlap geneRb1, Itm2b
Upstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, P2ry5
Downstream geneLOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578, LOC629583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267F12.T7 (MSMg01no267_f12.b1)MSMg01-267F12.TJ (MSMg01no267_f12.g1)
ACCAG408091AG408092
length732723
length of high quality
(start - end)
315 (46 - 360)287 (437 - 723)
definitionCHROMAT_FILE: MSMg01no267_f12.b1 PHD_FILE: MSMg01no267_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:23 2005CHROMAT_FILE: MSMg01no267_f12.g1 PHD_FILE: MSMg01no267_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,819,642 - 73,819,945)(73,657,105 - 73,657,391)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAATCTCCTGATGCCTTAGAATAGCATCATATTTGAGCATTCTAC
AGAGGTAATTAAGTTAAAATTGCCCCATAAAGGTAGACTGATCCAGTGTG
ATTGGTGTCTTTAAGGACCCAGGACAAATCAGGCAGAGATTGGAGGACCA
TGGATCTGAGGCTAGCCTGGACTACAGAATGAGATCCTGTCTCAAATTAA
ACAGAAACAAATAAGGACATTTGGCTACTGACACACAGAGAAGATGACAA
GAAAATAGGCCAGTATGTGCATTTTGGGAGGAGGAGCCTCAGGAGAAACT
GGGCTGGATACCTTGANCTCCGNTTCAGNNTCCAGCACTGTGAGAAACCT
GCTCTGTCGGTTGCAGCCTCCCAAAAGAAAATACTTTGTAGGCAGCTCTG
ACGTTCCGTTCCACTGTACTCTCAGCTCAGTATTCTGTGGGGCCTGGTCC
ACAGCAGGAGCTCGTGAGTGGACAGCTGACTGGAGTCAGATGTTTGGGCC
TGTTTCCGGGACAACAGGGATTTAAACATTATCAAAAAACAGTTTTTGAA
GGGGGCCGTTCTCCCTTTAACAGAAAGCATTTTCAAGTTTTATAATTTTT
AAAATTTATGTGCATGGNTGTATCTATGTCGCCTGTTATGTTCACATATG
TGCGGGCACGCTTCACTGTTGGCATTAACAGA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATATCACTAATCACACTGA
TGTAAAACTTCTAGAATTTTGACCCTGGTGGCATGCTTATAATCCCAGAA
GCTGGGATACAAGGCAGAAAGACTGTTCTGAACAATGACTGCAGCACAAA
CAGGTTACAGGAGACGCTGCCTCAAAAGAACCAAAAAAACCAAACACACA
ACAAACAAAAATCAGAGAGAATAGAGGAGTGGGGGAAGGGACAAAAAGGA
AAGAGGAAGATGAGAGACAGATAAATGAAATGTTTCAAATGTCTCAAAGA
AAGATTATTATCCATCNTATGACCCCCCCCACCCCGATCAAGATCCAATG
ATGCACTGCCTTAGGGCGATACGCATTCAATAGAAGAAAATGACACAGAT
AAGTTACAAACTAAATAAAGGGAGAGAGAGCCATATCGCTATTAACGGAA
GAAAGCTGAAACACATTTCCTACGTGAGACAGCTGTTGCACAATGTATCA
CCAGACAGAGCATTTTTCATAGAGATTAGCAACTCAGACAAAGAACATTA
CAAGTTTAATTTTTCCAGGCCTTTAGCCTCTGCCCACCTAGGCCCCTCTG
CACAGAAATCTTAGTTCCTTGTTCACATTGCTCCTTGCTACACACGTCCT
GCCTGGGTGGCTCTGACCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_f12.b1 MSMg01no267_f12.b1 CHROMAT_FILE:
MSMg01no267_f12.b1 PHD_FILE: MSMg01no267_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:23 2005
         (315 letters)



>mm_chr14_73819231_73819945
          Length = 715

 Score =  534 bits (276), Expect = e-156
 Identities = 297/304 (97%)
 Strand = Plus / Minus

                                                                       
Query: 10  ccaatctcctgatgccttagaatagcatcatatttgagcattctacagaggtaattaagt 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ccaatctcctgatgccttagaatagcatcatatttgagcattctacagaggtaattaagt 656

                                                                       
Query: 70  taaaattgccccataaaggtagactgatccagtgtgattggtgtctttaaggacccagga 129
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 taaaattgggtcataaaggtagactgatccagtgtgattggtgtctttaaggacccagga 596

                                                                       
Query: 130 caaatcaggcagagattggaggaccatggatctgaggctagcctggactacagaatgaga 189
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 595 caaatcaggcagagattggaggaccatggatctgaggctagcctcgactacagaatgaga 536

                                                                       
Query: 190 tcctgtctcaaattaaacagaaacaaataaggacatttggctactgacacacagagaaga 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tcctgtctcaaattaaacagaaacaaataaggacatttggctactgacacacagagaaga 476

                                                                       
Query: 250 tgacaagaaaataggccagtatgtgcattttgggaggaggagcctcaggagaaactgggc 309
           |||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||
Sbjct: 475 tgacaagaaaataggccagtatgtgcaagttgggatgaggagcctcaggagaaactgggc 416

               
Query: 310 tgga 313
           ||||
Sbjct: 415 tgga 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no267_f12.g1 MSMg01no267_f12.g1 CHROMAT_FILE:
MSMg01no267_f12.g1 PHD_FILE: MSMg01no267_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:23 2005
         (287 letters)



>mm_chr14_73656905_73657591
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatgacacagataagttacaaactaaataaagggagagagagccatatcgctattaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatgacacagataagttacaaactaaataaagggagagagagccatatcgctattaac 260

                                                                       
Query: 61  ggaagaaagctgaaacacatttcctacgtgagacagctgttgcacaatgtatcaccagac 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagaaagctgaaacacgtttcctacgtgagacagctgttgcacaatgtatcaccagac 320

                                                                       
Query: 121 agagcatttttcatagagattagcaactcagacaaagaacattacaagtttaatttttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagcatttttcatagagattagcaactcagacaaagaacattacaagtttaatttttcc 380

                                                                       
Query: 181 aggcctttagcctctgcccacctaggcccctctgcacagaaatcttagttccttgttcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcctttagcctctgcccacctaggcccctctgcacagaaatcttagttccttgttcac 440

                                                          
Query: 241 attgctccttgctacacacgtcctgcctgggtggctctgaccctctc 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgctccttgctacacacgtcctgcctgggtggctctgaccctctc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)