BAC Information

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BAC

Clone NameMSMg01-267F17
Chromosome14 (Build37)
Map Location 97,262,793 - 97,263,078
singlet/doubletsinglet
Overlap genenone
Upstream gene4921530L21Rik, Klhl1, LOC100043366
Downstream geneLOC668654, EG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-267F17.T7 (MSMg01no267_f17.b1)MSMg01-267F17.TJ (MSMg01no267_f17.g1)
ACCAG408100AG408101
length749738
length of high quality
(start - end)
321 (46 - 366)287 (447 - 733)
definitionCHROMAT_FILE: MSMg01no267_f17.b1 PHD_FILE: MSMg01no267_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:24 2005CHROMAT_FILE: MSMg01no267_f17.g1 PHD_FILE: MSMg01no267_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:05:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAATGAACCCTGGAAAAAAGTATCTCCAACAAATAGTGTAAAT
CAAAGTGCATGCTTGCACATATAAGTATCCAAGTAGACTCATATTTATTA
TATTATATAAAACGCACGCCAAAGTGAGCTAAGACTCCTAGAAATGGAGA
AAGAATATTGAAACCAAAGCAGACATCTCATGTAAGAAGGCAAAACTTCC
AATGGAGGAATTAGGACACCAATCCAGCTACAAAACCTCATACCTACAAT
TTGTCTTGCCTTCAGGATATACAGCTTTAAAATGTGAAGCAGAATTTTAG
GGAAAGGACTATCTANGTTTGTTCCCGATTCTGANCCATGCCATGAGAGG
GAGCCTGTTCTGACACTATTACTGATATTACAAATATATGTTCAAACAGG
AAGCCTACATAACTGTCATTAGAAAGGCTTCAGATGTTCTTTCAGGTGCT
TCTCAGCCATTTGGTAATTCCTCAGGTGAGAATTCTTTGTTTAGCTCAGC
ACCCCATTTTTAATGGGGTTATTTGATTTCCTGGAGTCCACCTGCTTGAG
TTCTTTGTATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAA
AGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCT
TTTGCCTTACAGAAGCTTTGCAATTTTAAGAGGTCCCATTTGTCGATTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCCGAAAATCTAGATGGGTAAAACAGGAGTGGGTTGGT
AAGGGAGCACCCTCTTTTAGGCAATGGGGAGGGGGCTAGGGCTGGGGGGT
TCACGGAGGGGAGAAAAGGAAGGGGATAACAATTGAAATGTAAACAAATA
AAATGATTAGTAAATTTTTAAAAGGCTAATGCTCTTTCAGAACCCTAAAA
AAATATTCCAAACTGGTCCTGAATATCCAGTTAGAAAAAAATCCATAAGG
TATTACCATTCTAATTGTGTATCATAGACTCAGAATCTGATATAATAAGA
AAGTTCTATATTGGATAAGTATCCCCCCCCCTCCCCCTAAAATAGAGATA
ATTAAACTATTTTCTTGTTGGGTATGTAAAATAAAACAAGTGTANGTGCT
GTGAAAATGACAAAAATATAAAGACAAGCATTACAATAACCATTTTATAC
AGTTTATTGCTATTAATATTTTAAGTCCATACTTACAAGTATTAGCTCTA
CACATGTATGATTCTTCACTTGCTAATTCACATTGTGTTTGTGTGTGTAT
ATCTATTGAGTTATTCTTTCTTTTTTGTATAGAGAAAGGTTTTTTTTTTT
TTTTTTCATAGCTCTTACCTTAGGTAGACTTTTAGGACTTAGCTGGCTGA
TGGATATGTAGTTTGACTTTGTGATATAAATAGACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no267_f17.g1 MSMg01no267_f17.g1 CHROMAT_FILE:
MSMg01no267_f17.g1 PHD_FILE: MSMg01no267_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:24 2005
         (287 letters)



>mm_chr14_97262593_97263278
          Length = 686

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgtgaaaatgacaaaaatataaagacaagcattacaataaccattttatacagttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgctgtgaaaatgacaaaaatataaagacaagcattacaataaccattttatacagttta 427

                                                                       
Query: 61  ttgctattaatattttaagtccatacttacaagtattagctctacacatgtatgattctt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 426 ttgctattaatattttaagtccatacttacaagtattagctctacacatgtatgtttctt 367

                                                                       
Query: 121 cacttgctaattcacattgtgtttgtgtgtgtatatctattgagttattctttctttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cacttgctaattcacattgtgtttgtgtgtgtatatctattgagttattctttctttttt 307

                                                                       
Query: 181 gtatagagaaaggtttttttttttttttttcatagctcttaccttaggtagacttttagg 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtatagagaaag-tttttttttttttttttcatagctcttaccttaggtagacttttagg 248

                                                          
Query: 241 acttagctggctgatggatatgtagtttgactttgtgatataaatag 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 acttagctggctgatggatatgtagtttgactttgtgatataaatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space:   188206
Effective search space used:   188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)