BAC Information

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BAC

Clone NameMSMg01-268F05
Chromosome14 (Build37)
Map Location 108,792,059 - 108,792,292
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754, LOC668757
Downstream geneEG668761, Slitrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268F05.T7 (MSMg01no268_f05.b1)MSMg01-268F05.TJ (MSMg01no268_f05.g1)
ACCAG408795AG408796
length734800
length of high quality
(start - end)
318 (46 - 363)234 (77 - 310)
definitionCHROMAT_FILE: MSMg01no268_f05.b1 PHD_FILE: MSMg01no268_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:35 2005CHROMAT_FILE: MSMg01no268_f05.g1 PHD_FILE: MSMg01no268_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATGTTTATTTAGAATATGTGCATTACTTCATTAAAATTTTGGTA
TATGTACAGAGATAAAAAGATATTTTAAAGTTGATTCAAATACATTTTTT
CTTTATTTTTTTAATTTATTATGTATTTTCCTCAATGACATTTCCAATGC
TATCCCAAAAGTCCCCCATACCCTCACCCCCCCACTTCCCTACCCACCCA
TTCTCATTTTTTTGGCCCTGGCATTCCCCAGTACTGGGGCATATAAAGTT
TGTGTGTCCAATGGGCCTCTCTTCCAAGTGTTGGCCCACTAGGCCATCTT
CTGATACATATGNAGTTAGTGTCCCAGGCANTCCTTAGTTCATAATGTTG
TTGTACCTACAGGGTTGCAGATCTCTATAGAAACAAGAATACTTTCTCTA
GCTCCTCTATTGGGGGCCCTGTGATCCATCCACTAGCTGACTGTGAACAT
CCACTTATGTGTTTGCTAGGACCCTGCCTAGTCTCACAAGAGACAGCTAT
ATCTGGGTCCTTTCAGCAAAATCTAGCTAGTATATGCAGTGGTGACAGCT
TTGGAAGCTAATTATGGGGTGGATCCCTAGATAAGGCAGTCTCTAGATGG
TCCATCCTTTTGTCGCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATG
GGTGTTTTGTTCCCAATTCTAAGAAGGGGCACAG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAGATCTAGGACCACACAACCAA
AATACAAGACAAAACAAAATATTACAAAAGACAACAAAGCAAACATATAA
AGGGCAACTAGAGTCATGATTTAAGTATCTCTAAAAACAGGTTACAAAAG
ACAGGGAGAAATGGAAATGCGCTAAGTATTACAACATGCAAGTAGATAGT
ATAATGAGAAAAAGAATGGGGTTAATGTACAAAGGAAGTCACGTGACCCG
GGACTGGAAAAGACATTCCCACATAGCCTTCATGAACCAAAGTATGAGTG
AGAAAANNCGAATATTGTTTATTNCCCCCCCGCCCCTCGCGGTGTTATGA
AACTTCTACCAAAACCTTTTTCGGGNGCATTTTAAAACCNNNNNGGGCCC
CTTTTCCGTGCCCGGGGGCTGGGTGGGGGGGAGGGGGGGGGGGGGGGTGG
AGGGGGGGGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNN
NNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNN
TTTTNNNNNTTTTNNNNCNNNNNNNNNNNNNNNNNTNTTTNNNNNTTCTT
TCCTTTTTTTTTCCCCTCTTCCCCTCCTCTTTTTNTTTTNCCTCCCCCCT
CACGAANTTCCNNNNNNNNNNNNNNNNNNNNNCGNNNNNNNNTCCCCTTC
CCCCCCCCCCCGCCCCCCNNNNTTTTTTTTTTTTTCTCAAAAGAGGGCGG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_f05.g1 MSMg01no268_f05.g1 CHROMAT_FILE:
MSMg01no268_f05.g1 PHD_FILE: MSMg01no268_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:35 2005
         (234 letters)



>mm_chr14_108791859_108792492
          Length = 634

 Score =  398 bits (206), Expect = e-115
 Identities = 227/234 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagatctaggaccacacaaccaaaatacaagacaaaacaaaatattacaaaagacaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagatctaggaccacacaaccaaaatacaagacaaaacaaaatattacaaaagacaaca 260

                                                                       
Query: 61  aagcaaacatataaagggcaactagagtcatgatttaagtatctctaaaaacaggttaca 120
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 aagcaaacatataaatggcaactagagttatgatttaagtatctctaaaaacaggttaca 320

                                                                       
Query: 121 aaagacagggagaaatggaaatgcgctaagtattacaacatgcaagtagatagtataatg 180
           ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 321 aaagacagggagaaatggaaatgtgctaagtattacaacatgcaaatagatagtataatg 380

                                                                 
Query: 181 agaaaaagaatggggttaatgtacaaaggaagtcacgtgacccgggactggaaa 234
           |||||||||||||||||||||| ||||||||| |||||||||| ||||||||||
Sbjct: 381 agaaaaagaatggggttaatgtgcaaaggaagccacgtgacccaggactggaaa 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)