BAC Information

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BAC

Clone NameMSMg01-268J02
Chromosome14 (Build37)
Map Location 51,685,487 - 51,686,114
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12
Downstream geneOlfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268J02.T7 (MSMg01no268_j02.b1)MSMg01-268J02.TJ (MSMg01no268_j02.g1)
ACCAG408948AG408949
length703703
length of high quality
(start - end)
657 (45 - 701)627 (77 - 703)
definitionCHROMAT_FILE: MSMg01no268_j02.b1 PHD_FILE: MSMg01no268_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:52 2005CHROMAT_FILE: MSMg01no268_j02.g1 PHD_FILE: MSMg01no268_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCACAACAGATTACTCTCGAATGGCTGAGAAGCACTTAAAAGAAAAG
ATCAAAGTTCTTACTCATCAGGGAAATACAAATCAAAACAACCCTGAGAT
TCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTG
GGATTGCAAGCTTGTACAACAACTCTGGAAATCAATCTGGAGGTTCCTCA
GAAAATTGGAAATAGATCTACCATATCCAAAAGGTCCCACCATGCCACAG
GAGCACATGTTCCACTATGTTCATAGTGGCCCTATTTTCGATAGACAGAA
GCTGGAAACAACCCAGATATCCCACAACAGAAGAATGGATACAGAAAATG
TGGTTCATTTACACAATGGAAATCTACTCAGCTATTAAGAACTAGGACAT
CATGAGTTTTGCAGGCAAATGGATGGAACTAGAAAATATCATCCTGAGTG
AGGTAACTTAGACCCAAAAGGACATGCATGGTATGTACTCACTAATAAGT
GGATATTAGCCAAAAAAAGTACAGACTATCCAGGATACAATCCACAGGAC
TCAAGCAAGAAGGTTAACAAGCACAAGGGCCTAAGTGAGGAGGCTTCAAT
TCN
TCGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAAATGTGTAATGGAAAACCA
TAAAGGAAGATAAATCAGTCCCTGCAGAGAATGGAAGAGAGCCCACCAAA
CTGTGGCCAGGTGGGGATGAGTAGTATTGCGGGGAAACAGAAAGGAGCCA
AGGACCAGAGGATGATGGGAGAGAAGAAAGAGCAAGAAGGGAAGGAGGGA
GGGCAGTTTTGATTGAGGCTGATTTTGTCTAAACCCACTCTCTGAAAATT
ATAGCAGTAAAGATGACAAAAAAAAAAAACCCTATAATAATGGGCACTTA
TTTCTGAAAAAGTACACTACATAGCTAACCAAATGATATAGTAATTTACA
GTCTTAAAGAACGAACCTTGTGACTTTCTTGGGGGTGTAGTGGCCAGGGC
CACCTAGAAAGTCTGAGGACCGGTGGCCGGGCAGTGCTGGGAGACGCAGG
TCTAAGCAAGCCAACAAAGACCCCGCTTGCCCGGCTCTGTGCACAGGACA
GCTTGGTGAGACCTCTGTAGACTCAAACCCGGATCAAGAACATCTGCCGT
AGAAGGCTTATTTTCCTAATTATCGGAGCTCATCCATTTCCTTCAAAATG
TTTTGAGGCCAGCAGCATCATGTGTACATTTATATAAGACAGGATGTAAT
GAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_j02.g1 MSMg01no268_j02.g1 CHROMAT_FILE:
MSMg01no268_j02.g1 PHD_FILE: MSMg01no268_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:52 2005
         (627 letters)



>mm_chr14_51685287_51686314
          Length = 1028

 Score = 1199 bits (620), Expect = 0.0
 Identities = 626/628 (99%), Gaps = 1/628 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttaaatgtgtaatggaaaaccataaaggaagataaatcagtccctgcagagaatggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tcttaaatgtgtaatggaaaaccataaaggaagataaatcagtccctgcagagaatggaa 769

                                                                       
Query: 61  gagagcccaccaaactgtggccaggtggggatgagtagtattgcggggaaacagaaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gagagcccaccaaactgtggccaggtggggatgagtagtattgcggggaaacagaaagga 709

                                                                       
Query: 121 gccaaggaccagaggatgatgggagagaagaaagagcaagaagggaaggagggagggcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gccaaggaccagaggatgatgggagagaagaaagagcaagaagggaaggagggagggcag 649

                                                                       
Query: 181 ttttgattgaggctgattttgtctaaacccactctctgaaaattatagcagtaaagatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ttttgattgaggctgattttgtctaaacccactctctgaaaattatagcagtaaagatga 589

                                                                       
Query: 241 c-aaaaaaaaaaaaccctataataatgggcacttatttctgaaaaagtacactacatagc 299
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 caaaaaaaaaaaaaccctataataatgggcacttatttctgaaaaagtacactacatagc 529

                                                                       
Query: 300 taaccaaatgatatagtaatttacagtcttaaagaacgaaccttgtgactttcttggggg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 taaccaaatgatatagtaatttacagtcttaaagaacgaaccttgtgactttcttggggg 469

                                                                       
Query: 360 tgtagtggccagggccacctagaaagtctgaggaccggtggccgggcagtgctgggagac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgtagtggccagggccacctagaaagtctgaggaccggtggccgggcagtgctgggagac 409

                                                                       
Query: 420 gcaggtctaagcaagccaacaaagaccccgcttgcccggctctgtgcacaggacagcttg 479
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gcgggtctaagcaagccaacaaagaccccgcttgcccggctctgtgcacaggacagcttg 349

                                                                       
Query: 480 gtgagacctctgtagactcaaacccggatcaagaacatctgccgtagaaggcttattttc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gtgagacctctgtagactcaaacccggatcaagaacatctgccgtagaaggcttattttc 289

                                                                       
Query: 540 ctaattatcggagctcatccatttccttcaaaatgttttgaggccagcagcatcatgtgt 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctaattatcggagctcatccatttccttcaaaatgttttgaggccagcagcatcatgtgt 229

                                       
Query: 600 acatttatataagacaggatgtaatgaa 627
           ||||||||||||||||||||||||||||
Sbjct: 228 acatttatataagacaggatgtaatgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1028
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1018
Effective search space:   628106
Effective search space used:   628106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)