BAC Information

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BAC

Clone NameMSMg01-268L08
Chromosome14 (Build37)
Map Location 14,838,292 - 14,954,120
singlet/doubletdoublet
Overlap geneAtxn7, Psmd6
Upstream geneEG328354, Synpr, A430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7
Downstream geneOlfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7, Nek10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268L08.T7 (MSMg01no268_l08.b1)MSMg01-268L08.TJ (MSMg01no268_l08.g1)
ACCAG409043AG409044
length726724
length of high quality
(start - end)
269 (439 - 707)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no268_l08.b1 PHD_FILE: MSMg01no268_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:02 2005CHROMAT_FILE: MSMg01no268_l08.g1 PHD_FILE: MSMg01no268_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,953,852 - 14,954,120)(14,838,292 - 14,838,577)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAACTGAGACGCAAATCCTGGCTTTAAGTCTCTGTGGTAAGATA
AGTCTCTGTGTTGAGATTTTCTCGGGGTAGCAGATTACAGTCATCACAAT
TGCAGGGCCTAACAAAAGCAAAGGACAGAAAGTCCGTGCAGTGGGTTTAC
TAGTTACTTTTTCTTGCTGTGATAAAACGCCATGACCAAAGCAGCTCATG
AGTCTAATTTGGTTTGCACTTTCTGAGAGTCCTTAGTAGTGGCAGGGGCA
TAGAAACAGGCTGGAACAAGAACCTGGGAGATCACATCTTCAACCACACA
GAGAGAACTTATAAATAATTGCACCCCCCCCCGCAGTCAGAAATTCTCAA
ACCTACCCCAGTGAGCGACTGCCTAAAGAAAAAAAAACACCTTTTTATGG
TTCCTTAAGGTGTCCAAACAGCACCACCAATGGGGACCATGTGGTCAAAT
ATTGAAACTCAGTGGGACATTTCTCATTGTGTCACACAGTAGGATTTATA
GACCATTACCCATTCTGAAGACTCCTCCAACATGTGCACACAAAAATAAT
GTAAATCACTGAATTAATAATTGGAAACACGGGGTACTCTTTTCTTAGAA
TAGGGAAGAATGTGGATTTTAAATGTAAGGAAGATAGGTTCTACACAGGC
CTTGTCATGTAGCTGGTGTGTAACCT
TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTTCCAAGTGCTCCCTCCCTT
ATTCGGAAATGAACAGTTTCCAACCCCGGGACATTGAAGCATTGATCACA
TTGCTACTTTGATTTCAGAGCATATGCTGTTGACCCGGCTGTGAAGTTCT
GTGACTTAGTGGTAGGGATGGCTTCCCATGTGCTTACTGGGAAGGGTCAG
GACAGATGTTGTAAAAGAAATGAAACTTCAAGATAGACTTCATTGGCTGA
GAGTTTTATCTGGGGGTGGGTCGGTTAGTATATTTTAGATGATGTTACCT
ATATGAATAAAATTAGGATCAGTATACCTCCCCGCCCCAGCACATTGTAT
GCTGTTGAGGTGTTGGCTTACCCTACCCTATATAAAATAATTTCAGGAAG
TGGAGTAATATACAGAACTGGAAGCGTTGAAGCAGGGCAGCCTGGAGAGG
CTTTTGGATACTATACCTTTTTATTTATTTCTTCAGATTTTGGGAGCCCC
TCAAAATGAGCAAAGGCTGATATTAAGTAAAGCACTTTAGCAAAACCTCC
TAAACTAACACAACGTGGACAGAATAAAACTGGGGCTTACTGCGGAACAG
ATGTAGTGCTGTCAAGAGTAACAGCTGTCTGGTTTGCTCTTGCACTGCTG
ACTTCTAAAGTGGCTAGTTTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_l08.b1 MSMg01no268_l08.b1 CHROMAT_FILE:
MSMg01no268_l08.b1 PHD_FILE: MSMg01no268_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:02 2005
         (269 letters)



>mm_chr14_14953562_14954230
          Length = 669

 Score =  520 bits (269), Expect = e-152
 Identities = 269/269 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctttttatggttccttaaggtgtccaaacagcaccaccaatggggaccatgtggtcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acctttttatggttccttaaggtgtccaaacagcaccaccaatggggaccatgtggtcaa 500

                                                                       
Query: 61  atattgaaactcagtgggacatttctcattgtgtcacacagtaggatttatagaccatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atattgaaactcagtgggacatttctcattgtgtcacacagtaggatttatagaccatta 440

                                                                       
Query: 121 cccattctgaagactcctccaacatgtgcacacaaaaataatgtaaatcactgaattaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cccattctgaagactcctccaacatgtgcacacaaaaataatgtaaatcactgaattaat 380

                                                                       
Query: 181 aattggaaacacggggtactcttttcttagaatagggaagaatgtggattttaaatgtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aattggaaacacggggtactcttttcttagaatagggaagaatgtggattttaaatgtaa 320

                                        
Query: 241 ggaagataggttctacacaggccttgtca 269
           |||||||||||||||||||||||||||||
Sbjct: 319 ggaagataggttctacacaggccttgtca 291


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no268_l08.g1 MSMg01no268_l08.g1 CHROMAT_FILE:
MSMg01no268_l08.g1 PHD_FILE: MSMg01no268_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:02 2005
         (287 letters)



>mm_chr14_14838092_14838778
          Length = 687

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggttccaagtgctccctcccttattcggaaatgaacagtttccaaccccgggacattg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 caggttccaagtgctccctcccttattcggaaatgaacagtttccaaccctgggacattg 260

                                                                       
Query: 61  aagcattgatcacattgctactttgatttcagagcatatgctgttgacccggctgtgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcattgatcacattgctactttgatttcagagcatatgctgttgacccggctgtgaag 320

                                                                       
Query: 121 ttctgtgacttagtggtagggatggcttcccatgtgcttactgggaagggtcaggacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgtgacttagtggtagggatggcttcccatgtgcttactgggaagggtcaggacaga 380

                                                                       
Query: 181 tgttgtaaaagaaatgaaacttcaagatagacttcattggctgagagttttatctggggg 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 tgttgtaaaagaaatgaaacttcaagatagacttcattagctgagagttttatctggggg 440

                                                         
Query: 241 tgggtcggttagtatattttagatgatgttacctatatgaataaaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggtcggttagtatattttagatgatgttacctatatgaataaaa 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)