BAC Information

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BAC

Clone NameMSMg01-270A07
Chromosome14 (Build37)
Map Location 64,821,776 - 64,822,442
singlet/doubletsinglet
Overlap geneMsra
Upstream geneGata4, LOC100042988, LOC432868, Blk, LOC668293, BC065085, Tdh, Mtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik
Downstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270A07.T7 (MSMg01no270_a07.b1)MSMg01-270A07.TJ (MSMg01no270_a07.g1)
ACCAG409974AG409975
length735741
length of high quality
(start - end)
688 (39 - 726)667 (75 - 741)
definitionCHROMAT_FILE: MSMg01no270_a07.b1 PHD_FILE: MSMg01no270_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:35 2005CHROMAT_FILE: MSMg01no270_a07.g1 PHD_FILE: MSMg01no270_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
GGGACTCTTGAGAGGGTTTAACAATGCCAGAGCCCGGAGAGAGGCAGAGG
CTGCTGCTCCCCCTGCTGCTGCAGCTGCAGTTTGTTACGTGGGTGTGAGC
AAAGAGTGAGAAGAAAAAAGCTGGAAATAGACTGATGACAAAGATTGACT
TTCCCAAGGAACTTGATGCCTCTAATCAGCAGTCTAAGGATAGTGATGGC
CCCCTTTTCCTCTCTAGCCTTCTTTCTCTCCTACCTAGTGTTGGGGACAT
TGGAAGCGATATGGTGGTAGATATAAGAACCCAATAATGTAGACCAAAAA
GATAGCGCCTACATTTCTCTGTCTCTCACAGTTTCATGGCTTGCATGTAA
GTCATCAATTCACTTCAAATTGGCCTTTCTCATGTGGTGAGTAAAAGACA
GGGTTGAATCTCTCTAGCTTGGAATGTCTGACTTTTCTTGGATCAGTGAT
TGAAGAGAATTTCTTTTTTTTTCAATACAAATTCTTATTGCTTCTACAAA
AACAAAACAAAATAAAATAAATCACAACAACAAAATCAGTTGAGTATTGG
TGAATGGGCCTGTCTCTGTGTTGTCTGTTGTATTTTAGTGCCATTGTAGC
TGCAGTATATCTGAGGGAAGTTGATGCAATGCCTCCAGCTTTGTTCTGTT
GGTTTAAGACTGCTTTGGTCTTTTGTGGCTTCAGA
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGAGTCAACTGACCATAACCCTCTAC
ATTTTCTATTGAGGTTGTTCTGGGAATGAAAATGTACCCCTCTGGGCTTC
AGTTTCCTAGCAACAGAGGTAGGAGAACAGATCTTGCCCTATGCCCTTGT
GTGGTGTGAAGGTCATTCGGCATAATGGGAGGGAAAAATGTTAAGAACCC
TTGAGATTTATGAAGACTCTCAGTGTGTGTCTTCTCTCCAGTTCACAGGA
GGAACTGGAGCTGCAGAGATGAATCCAAGGTCACGTAGGTGAAGCCAGAG
CCAGGGCCCCAGCTGGCTCTTCTCATCCAAGGCTATGATTCTTCCCTTCC
CTCCTCGGAGCTGAGCACACACAACACAGCTGTCTCAGTCTGCTCTGGAA
AAATACCTCAGACTGGAGGCACACAGCAGGACTGTGGACTTTGGTAAAGG
GCAAAGTATAGCAAGGCAGGTTGTATTGCAAGGCCCCTTCTCCTGCCTCG
TAGATGTTTAGGTTGTGTTTACACATCTTCCCTGAACACAGGAGTAAAAA
CAGAAAGTAGCCCCCTGGTGCCTACTGCCTTTTCTTCTAAGGACGAAAAT
CCCTCCGTGGGAGCTCTATCAGTATGACCTCAACTAACCCAAATTACCCA
GATCAAAAACCATCACACTAGGGGAGGAGAAGGCTTTAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_a07.g1 MSMg01no270_a07.g1 CHROMAT_FILE:
MSMg01no270_a07.g1 PHD_FILE: MSMg01no270_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:35 2005
         (667 letters)



>mm_chr14_64821576_64822642
          Length = 1067

 Score = 1274 bits (659), Expect = 0.0
 Identities = 665/667 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagtcaactgaccataaccctctacattttctattgaggttgttctgggaatgaaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagtcaactgaccataaccctctacattttctattgaggttgttctgggaatgaaaatg 260

                                                                       
Query: 61  tacccctctgggcttcagtttcctagcaacagaggtaggagaacagatcttgccctatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacccctctgggcttcagtttcctagcaacagaggtaggagaacagatcttgccctatgc 320

                                                                       
Query: 121 ccttgtgtggtgtgaaggtcattcggcataatgggagggaaaaatgttaagaacccttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgtgtggtgtgaaggtcattcggcataatgggagggaaaaatgttaagaacccttga 380

                                                                       
Query: 181 gatttatgaagactctcagtgtgtgtcttctctccagttcacaggaggaactggagctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatttatgaagactctcagtgtgtgtcttctctccagttcacaggaggaactggagctgc 440

                                                                       
Query: 241 agagatgaatccaaggtcacgtaggtgaagccagagccagggccccagctggctcttctc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagacgaatccaaggtcacgtaggtgaagccagagccagggccccagctggctcttctc 500

                                                                       
Query: 301 atccaaggctatgattcttcccttccctcctcggagctgagcacacacaacacagctgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccaaggctatgattcttcccttccctcctcggagctgagcacacacaacacagctgtc 560

                                                                       
Query: 361 tcagtctgctctggaaaaatacctcagactggaggcacacagcaggactgtggactttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagtctgctctggaaaaatacctcagactggaggcacacagcaggactgtggactttgg 620

                                                                       
Query: 421 taaagggcaaagtatagcaaggcaggttgtattgcaaggccccttctcctgcctcgtaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaagggcaaagtatagcaaggcaggttgtattgcaaggccccttctcctgcctcgtaga 680

                                                                       
Query: 481 tgtttaggttgtgtttacacatcttccctgaacacaggagtaaaaacagaaagtagcccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtttaggttgtgtttacacatcttccctgaacacaggagtaaaaacagaaagtagcccc 740

                                                                       
Query: 541 ctggtgcctactgccttttcttctaaggacgaaaatccctccgtgggagctctatcagta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctggtgcctactgccttttcttctaaggacgaaaatccctccgtgggagctctatcagta 800

                                                                       
Query: 601 tgacctcaactaacccaaattacccagatcaaaaaccatcacactaggggaggagaaggc 660
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgacctcatctaacccaaattacccagatcaaaaaccatcacactaggggaggagaaggc 860

                  
Query: 661 tttagca 667
           |||||||
Sbjct: 861 tttagca 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)