BAC Information

Click to search

BAC

Clone NameMSMg01-270C11
Chromosome14 (Build37)
Map Location 40,637,594 - 40,638,249
singlet/doubletsinglet
Overlap genenone
Upstream geneNrg3
Downstream geneLOC100040439, LOC218945, LOC100040470, LOC382876, Sh2d4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270C11.T7 (MSMg01no270_c11.b1)MSMg01-270C11.TJ (MSMg01no270_c11.g1)
ACCAG410071AG410072
length725736
length of high quality
(start - end)
684 (42 - 725)662 (75 - 736)
definitionCHROMAT_FILE: MSMg01no270_c11.b1 PHD_FILE: MSMg01no270_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:45 2005CHROMAT_FILE: MSMg01no270_c11.g1 PHD_FILE: MSMg01no270_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAAATGAGGAATACCGAATGGCTGAGAAACACCTGAAAAAGGGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACATCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGAAGATG
CTGGCAAGGATGTGGAGAAAGAGGGACACTCCTCCATTTTTGGTGGGATT
GCAAGCTAGTACAACCACTCTGGAAATCAGTCTTGTGGTTCCTCAGAAAT
TGGACATAGTACTACCAGAATATCCAGCAATACCTCTCCTGGGCATATAC
CCAGAACATGTTCCTACTTGTAATAAGGACACATGCTCCACTATGTTCAT
AGCAGAGTTATTTATAATAGCCAGAAGTTGGAAAGAACCCAGATGTCCCT
CAACAGAGGAATGGATACAGAAAATGTGGTATATTTACACAATGGAGTAC
TACCTAGCTATTTAAAACAATGAATTCATGAAATTCTTGGGCAAATGGAT
GAATCTGGAGATTATCATCATGAGTGAGGTAATCCAATCACAAAAGAACA
CACATGATATGCACTCACTGATAAGCGGATATTAGCCCAGAAACTTAGAA
TACCCAAGATAGAATTTGCAAAACACATAAAACTCAAGAATAAGGAAGAC
CAAAGTGTGCATACTTTGTTCCTTN
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCAGACTAGAGATGGCTGCCCCAGGT
GCTCTGGCAAAGCCCTCCCGGGCCGGGCAGACACTTTTACTCTGGCAGGG
AAGGTGCCCAGATGTCTGGAGCACAAAACGGGGTCTGTTCCAGAAGCTGT
GTCGCTTCTGCCTGTCCCAGAGCCTGTTAGCTTCTGTAGTCCACATTCTC
ACCTGCACAGACTAGTCTCTGAGTGATCCAGGGGGGAACCAAGATGTCTC
CCCCAGGTGCTCTGGCAAAGCCCTCCCAGGTGAGGCAGACACCTCTCCTG
TGGCAGGTAAGGTGCCTGGATGTCTGGAGCCTGAAACGGGGTCTGCCCCA
GAAGCTGTGTGGCTCCTGCCTGTCCCAGAAGCTGTTAGCTTCTGTAGTCC
ACACTCTCACCTGTACAGACTAGTCTCTGAGCGACCCAGGAACAAAATGT
GTCTCCCAGGTGCTCTGGCAAAGCCCTCCCAGGCAGGGTGGGCACCTCCC
AAAATTACTTTTCTAACTGCATAAAAGTTTATTGAGATGTATAGACTTTG
GATCTGGTTAAGTTTGGTATTATTTTATGTTTGTAAGACTGCTTTTAAAA
TTGATATATTTTGTTTTTAAGGAGATATACAATATTAAAAAGATGTGTAG
AATGATATAAATAAAAATGTCAAATGTGCAAGATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_c11.g1 MSMg01no270_c11.g1 CHROMAT_FILE:
MSMg01no270_c11.g1 PHD_FILE: MSMg01no270_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:45 2005
         (662 letters)



>mm_chr14_40637389_40638450
          Length = 1062

 Score = 1162 bits (601), Expect = 0.0
 Identities = 644/661 (97%), Gaps = 5/661 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagactagagatggctgccccaggtgctctggcaaagccctcccgggccgggcagacac 60
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 206 ccagaccagagatggctgccccaggtgctctgacaaagccctcccgggccgggcagacac 265

                                                                       
Query: 61  ttttactctggcagggaaggtgcccagatgtctggagcacaaaacggggtctgttccaga 120
           ||||||||||||||||||||||||||||| ||||||||||||||| |||||     ||||
Sbjct: 266 ttttactctggcagggaaggtgcccagatatctggagcacaaaacagggtc-----caga 320

                                                                       
Query: 121 agctgtgtcgcttctgcctgtcccagagcctgttagcttctgtagtccacattctcacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 agctgtgtcgcttctgcctgtcccagagcctgttagcttctgtagtccacactctcacct 380

                                                                       
Query: 181 gcacagactagtctctgagtgatccaggggggaaccaagatgtctcccccaggtgctctg 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gcacagactagtctctgagtgatccaggggggaaccaagatgtctccctcaggtgctctg 440

                                                                       
Query: 241 gcaaagccctcccaggtgaggcagacacctctcctgtggcaggtaaggtgcctggatgtc 300
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tcaaagccctcccaggtgaggcagacacctctcctgtggcagggaaggtgcctggatgtc 500

                                                                       
Query: 301 tggagcctgaaacggggtctgccccagaagctgtgtggctcctgcctgtcccagaagctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggagcctgaaacggggtctgccccagaagctgtgtggctcctgcctgtcccagaagctg 560

                                                                       
Query: 361 ttagcttctgtagtccacactctcacctgtacagactagtctctgagcgacccaggaaca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 ttagcttctgtagtccacactctcacctgtacagactagtctctgagcgatccaggaaca 620

                                                                       
Query: 421 aaatgtgtctcccaggtgctctggcaaagccctcccaggcagggtgggcacctcccaaaa 480
           ||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 621 aaatgtgtcccccaggtgctctggcaaagccctcccaggtggggtgggcacctcccaaaa 680

                                                                       
Query: 481 ttacttttctaactgcataaaagtttattgagatgtatagactttggatctggttaagtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttacttttctaactgcataaaagtttattgagatgtatagactttggatctggttaagtt 740

                                                                       
Query: 541 tggtattattttatgtttgtaagactgcttttaaaattgatatattttgtttttaaggag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggtattattttatgtttgtaagactgcttttaaaattgatatattttgtttttaaggag 800

                                                                       
Query: 601 atatacaatattaaaaagatgtgtagaatgatataaataaaaatgtcaaatgtgcaagat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atatacaatattaaaaagatgtgtagaatgatataaataaaaatgtcaaatgtgcaagat 860

            
Query: 661 g 661
           |
Sbjct: 861 g 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)