Query= MSMg01no270_n23.b1 MSMg01no270_n23.b1 CHROMAT_FILE:
MSMg01no270_n23.b1 PHD_FILE: MSMg01no270_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:38 2005
(306 letters)
>mm_chr14_16476214_16476918
Length = 705
Score = 493 bits (255), Expect = e-144
Identities = 292/311 (93%), Gaps = 15/311 (4%)
Strand = Plus / Minus
Query: 1 acttcacaggttggctgggaaacaacaaagtatttcatatattattagaatt--attttt 58
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 392 acttcacaggttggctgggaaacaacaaagtatttcatatattattagaattaaattttt 333
Query: 59 t-tttccccgctgaaggcttggtggataaatattggttatttatgaagcagggctttgta 117
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tcttt----gctgaaggcttggtggataaatattggttatttatgaagcagggctttgta 277
Query: 118 ttacagtatatgttggatgaaatgatagttttatatctatcaaaacccagcaagtcaaga 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttacagtatatgttggatgaaatgatagttttatatctatcaaaacccagcaagtcaaga 217
Query: 178 atgatgataactcatgcagcattcaagaagcagaggctggaagatcttgaattcaagatc 237
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 216 atgatgataactcatgcagcattccagaagcagaggctggaagatcttgaattcaaggtc 157
Query: 238 agcttcagaaacatagtgagattctgtgtctttta----ataaagggctagagatcaagc 293
|| ||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 156 agtttcagaaacatagtgagattctgtgtc----acagaataaagggctagagatcaagc 101
Query: 294 acagtagtaca 304
||||||||||
Sbjct: 100 gcagtagtaca 90
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 705
Length adjustment: 9
Effective length of query: 297
Effective length of database: 696
Effective search space: 206712
Effective search space used: 206712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_n23.g1 MSMg01no270_n23.g1 CHROMAT_FILE:
MSMg01no270_n23.g1 PHD_FILE: MSMg01no270_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:38 2005
(627 letters)
>mm_chr14_16330159_16331185
Length = 1027
Score = 1205 bits (623), Expect = 0.0
Identities = 626/627 (99%)
Strand = Plus / Plus
Query: 1 tggtgtcaagggaagtggttagcttttgcttaaggctttcctgagtggctatttgtcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtgtcaagggaagtggttagcttttgcttaaggctttcctgagtggctatttgtcaaa 260
Query: 61 gacaactaaagatcattgcaaatatactatggtatattatgaagcttcttattttaaata 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaactaatgatcattgcaaatatactatggtatattatgaagcttcttattttaaata 320
Query: 121 ataaataaagctaacattggcatcaaggttttgattatatctgatgacatgagtcttctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaataaagctaacattggcatcaaggttttgattatatctgatgacatgagtcttctg 380
Query: 181 ggtggagtaaatggtcaacatgtgatacatactgacctggttcctccagaaaattctact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtggagtaaatggtcaacatgtgatacatactgacctggttcctccagaaaattctact 440
Query: 241 gtccttctgccagctcaggggtgtgcagtgtggttttcacagtgttttcctatatctgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtccttctgccagctcaggggtgtgcagtgtggttttcacagtgttttcctatatctgga 500
Query: 301 catcaagtttgaatgagcctaaagattctcatttgactgaaatttcttttataagtctgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catcaagtttgaatgagcctaaagattctcatttgactgaaatttcttttataagtctgg 560
Query: 361 ccctgattttaaattcaccttgctcaaataatgtttaagctgttatcactgaaatgttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctgattttaaattcaccttgctcaaataatgtttaagctgttatcactgaaatgttaa 620
Query: 421 atttttttactgaatgtaaaattatattcatatcacaaataagtcaggaaaaaatattaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttttttactgaatgtaaaattatattcatatcacaaataagtcaggaaaaaatattaa 680
Query: 481 aggttcttccaagcctcagtatactgagagcttgtctgcccacaccaaggctcactgccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggttcttccaagcctcagtatactgagagcttgtctgcccacaccaaggctcactgccc 740
Query: 541 atttcttctagactaatattcaaagttcttattgtttgaaagagtagattccaaggtggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atttcttctagactaatattcaaagttcttattgtttgaaagagtagattccaaggtggc 800
Query: 601 aacagaggaaccaagagttttactgaa 627
|||||||||||||||||||||||||||
Sbjct: 801 aacagaggaaccaagagttttactgaa 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
