BAC Information

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BAC

Clone NameMSMg01-271C07
Chromosome14 (Build37)
Map Location 11,688,069 - 11,688,627
singlet/doubletsinglet
Overlap geneFhit
Upstream geneLOC100042415
Downstream geneLOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996, Ptprg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271C07.T7 (MSMg01no271_c07.b1)MSMg01-271C07.TJ (MSMg01no271_c07.g1)
ACCAG410778AG410779
length737745
length of high quality
(start - end)
617 (46 - 662)559 (71 - 629)
definitionCHROMAT_FILE: MSMg01no271_c07.b1 PHD_FILE: MSMg01no271_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:57 2005CHROMAT_FILE: MSMg01no271_c07.g1 PHD_FILE: MSMg01no271_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGTTTTTACTAACTGAGTAGTACTCCATTGTGTAAATGTACCA
CATTTTCCATTCTTCTGTTGAGGCACATCTGGGTTCTTTCCAACTTCTGT
CTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTA
CTGGTTGGAACATTTTCTGGATATATGGCCAGGAGAGGTATTGCAGGATC
CTCCAGTAGTACTACGTCCAACTTTCTGAGAAACCACCAGATTGATTTCT
AGAGTGGTTGTACCAGCTTGCAAGCCCACCAGAAATGGAGGAGTGTTCCT
CTTTCTCCACATCTTCACCAGCATCTGCCCTCAGTTGAATTTTTGATCTT
AGCCATTCTGACTGGCACAAGGTGGAATCTCAGGGTTGTTTTGATTTGCA
TTTCCCTGATGACTAAGGATGTTGAACATTTTTTTACAGGTGCTTCTCAG
CCATTTGGTATTCCTCAGTTGAGAATTCTTTGTTTAGCTCTGTACCCCAT
TTTTAATGGGTTTATTTGATTTTCTGGGGTTCAGCTTCTTCAGTTCTTTG
TATATATTGGATATATTTTCCCTGTTGGATTTAGGATTGGTAAAGATCCT
TTCCCAATCTGTTGGTGGGCTTTTTGTCTTATTGACGGTGTCTTTTGCCT
TACAGAAGATTTTCATTTCACGAAGTCTCATTTGTCA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGAGTGCCTATTCTCTTGCTTGACATCA
CTCAGCTTCCCACCATTAAAACAAGAATGAAAACACACATCTGCTGATGT
CCAAGGACCTCCATCACTCCATTACATGAGCATGACATTGACATCTAGCT
GAAGAGTGTGGGGTTTGTTGTTATTTTTGTTTGCAACAGTGTCTTGTTAT
TTAGCCTGGCTGGCATGAGGCTCTCTGTGTAACCAAGGCTAGCTTCAAAA
TACAGCATTCCTTCTGCCACCATAACCTGTGCGCCGAGCTTCTAGGCATG
CCTCACCAAACCCAGCCTGAAAGACTTGCAAGATGATAGAAGTGGGGTCA
AAAGTCATGGGTGACACGTTTGGTCTTCTGTAATAAGCACTATAGGGCTC
TTTCATATAAATAAACAATGCGGTCAGCTTGAATGGTGTAAATAAGATTC
TGGTTTTATCTACCTATGTTACACAAGGCAACTGACTCATGGCCACAAAT
CAGGATCTCAACACACCATGAAAATGGGGAGAAGAAAACAGAATTGTGCA
GTCTCCCATGGGATACTTGATACTATGGTGGACAGAACCAACCCCTAATG
GTATATGCAGTTTGACTGATGTAGTAGGACTTTGGGAATTGCTCCAGAGC
AAAGACAGTCACATTGCCTTGAATGCCCAAAAAGGATCGTTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_c07.g1 MSMg01no271_c07.g1 CHROMAT_FILE:
MSMg01no271_c07.g1 PHD_FILE: MSMg01no271_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:57 2005
         (559 letters)



>mm_chr14_11687869_11688827
          Length = 959

 Score =  980 bits (507), Expect = 0.0
 Identities = 546/559 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggagtgcctattctcttgcttgacatcactcagcttcccaccattaaaacaagaatga 60
           |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 caggagtgccaattctcttgcttgacagcactcagcttcccaccattaaaacaagaatga 260

                                                                       
Query: 61  aaacacacatctgctgatgtccaaggacctccatcactccattacatgagcatgacattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacacacatctgctgatgtccaaggacctccatcactccattacatgagcatgacattg 320

                                                                       
Query: 121 acatctagctgaagagtgtggggtttgttgttatttttgtttgcaacagtgtcttgttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatctagctgaagagtgtggggtttgttgttatttttgtttgcaacagtgtcttgttat 380

                                                                       
Query: 181 ttagcctggctggcatgaggctctctgtgtaaccaaggctagcttcaaaatacagcattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagcctggctggcatgaggctctctgtgtaaccaaggctagcttcaaaatacagcattc 440

                                                                       
Query: 241 cttctgccaccataacctgtgcgccgagcttctaggcatgcctcaccaaacccagcctga 300
           |||||||||||||||||||||| | ||||||||||||||||||||||| ||| |||||||
Sbjct: 441 cttctgccaccataacctgtgcactgagcttctaggcatgcctcaccacaccaagcctga 500

                                                                       
Query: 301 aagacttgcaagatgatagaagtggggtcaaaagtcatgggtgacacgtttggtcttctg 360
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 501 aagacttgcaagatgatagaagtggggtcaaaagtcatgggtgataggtttggtcttctg 560

                                                                       
Query: 361 taataagcactatagggctctttcatataaataaacaatgcggtcagcttgaatggtgta 420
           |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 taataagcactatagggccctttcatataaataaacaatgcggtcggcttgaatggtgta 620

                                                                       
Query: 421 aataagattctggttttatctacctatgttacacaaggcaactgactcatggccacaaat 480
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 621 aataagattctggttttatctacccatgtcacacaaggcaactgactcatggccacaaat 680

                                                                       
Query: 481 caggatctcaacacaccatgaaaatggggagaagaaaacagaattgtgcagtctcccatg 540
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 caggatctcaacacaccatgaaaacggggagaagaaaacagaattgtgcagtctcccatg 740

                              
Query: 541 ggatacttgatactatggt 559
           |||||||||||||||||||
Sbjct: 741 ggatacttgatactatggt 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)