BAC Information

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BAC

Clone NameMSMg01-271F10
Chromosome14 (Build37)
Map Location 75,431,719 - 75,579,916
singlet/doubletdoublet
Overlap gene5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1
Upstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169
Downstream geneCpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271F10.T7 (MSMg01no271_f10.b1)MSMg01-271F10.TJ (MSMg01no271_f10.g1)
ACCAG410920AG410921
length722742
length of high quality
(start - end)
312 (47 - 358)287 (71 - 357)
definitionCHROMAT_FILE: MSMg01no271_f10.b1 PHD_FILE: MSMg01no271_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:11 2005CHROMAT_FILE: MSMg01no271_f10.g1 PHD_FILE: MSMg01no271_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,579,611 - 75,579,916)(75,431,719 - 75,432,004)
sequence
GTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGCTTATGTAAGGATTGCTGGGTAGTATGCCTGTAACTGCATTT
AAAATACAATGATGGACTGCCGTCATTTATTTCTGAAGTCTACAGTTACC
GTATCATTTCTTATATTTCCCGAAGCCGTTGTCCATTTGGCGCTGTGAGG
CTCAAATGAAGACTGGAGCTTTGGAAAAGGAGGGGAGCAAGCTCTGAGGA
CAATGACTGCCACGTGTCCCCTCAGAGCGGTTGCCACAAGGACTCAGGGA
GCATGAAAGTAGGAAGTGAAATCGGAGGCCTTCCTGTTATGTAACGAATT
CATTATTTTTTTTTTAACCGACCACTATTCATTCCAGTCAATATCTTCAG
CAGCCCTGTGCGCCGGCGGAGAGAGGGAACTCCGCTCTATATGTGCGGCA
GGACAGGGGGAAAAAAAAATTAAGAAGATGCAATCAATGCAACGCTGACC
TGAAGGCAAAGCCTTAGGCAAGCTTCAGTCAGTGGAGGAAGCAAGCTGAG
GACCTGCCTTTCCAAGAGGCCCTTGAAAAGTCAGACGATTCAGGGGGAAG
ATCATTGAAGAAACAGCGAGAAAGAGTGATACAGCATGGAACTTTCTGGT
GGCTTGCGGTCTAGCGCGGCGCCCAGAACAGAACGTGGTTAGGTAAGACG
TGCGATGCTCATTGTTTCTTAC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGAATCACGCCCAGTGGTACAACGGCCAT
TGGAGAGCTGTGTTTTGAGCACGTTCACTCCATACCTGGAAAAATGGTGT
CCCAGTCCATAGGCTGGGGAGACTCTCCTGTGGACCTCTGTGAAGGGAGC
AACCGTGCCTTCCAGGACACTGACCAACCTGCTTGCCAATTGGATGTGAG
GCTCCTAAGACACAAAGCTTCCTGGATCAACCCGATGTGTGTGCAGCAGC
CACTTCAAGAATTATGCCCCCAAAGACCAACCGTGCAGAGCAATGAGAAC
CACGTGTTTCTGGACACTCCCTCTCCCTTGCACCTTTCGATATTGTCCTA
CAGGGACTCCCTGGCTGAGATGCCACTGTCTGAGAATACTGCTGATGTCA
TCTGCAGCAACTCTGCTCATTGCTCCGGGGGAAAGGAGGGTAACTTCTTC
CTGGCTACAGAAGAGCAAGAGGTTCATCTTCAGCAGGAATCTCTGCTCAA
AAACCCCAAGACTGTGGCCACTTCCCCCTCCCCTAATGAGGGCAGTGCCC
GTTCTGAGTCTCCTCATTTGACAGCTTCTACAGATGACGGTAACCCTAAT
GACTTCCTCTATTCTCCATCTCTGTGTTTGTCTTGGCCGGCTTGAAAATT
TGCCTATTGTCTTTGCCATGATAAACAAGTTTATGTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_f10.b1 MSMg01no271_f10.b1 CHROMAT_FILE:
MSMg01no271_f10.b1 PHD_FILE: MSMg01no271_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:11 2005
         (312 letters)



>mm_chr14_75579408_75580119
          Length = 712

 Score =  553 bits (286), Expect = e-162
 Identities = 301/306 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagcttatgtaaggattgctgggtagtatgcctgtaactgcatttaaaatacaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggaattcagcttatgtaaggattgctgggtagtatgcctgtaactgcatttaaaatacaa 450

                                                                       
Query: 64  tgatggactgccgtcatttatttctgaagtctacagttaccgtatcatttcttatatttc 123
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgatggactggtgtcatttatttctgaagtctacagttaccgtatcatttcttatatttc 390

                                                                       
Query: 124 ccgaagccgttgtccatttggcgctgtgaggctcaaatgaagactggagctttggaaaag 183
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 389 ccgaagccgttgtccatttggcgctgtgaggctcaaatgaagactggagccttggaaaag 330

                                                                       
Query: 184 gaggggagcaagctctgaggacaatgactgccacgtgtcccctcagagcggttgccacaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 329 gaggggagcaagctctgaggacaatgactgccacgtgtcccctcagagcagtcgccacaa 270

                                                                       
Query: 244 ggactcagggagcatgaaagtaggaagtgaaatcggaggccttcctgttatgtaacgaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ggactcagggagcatgaaagtaggaagtgaaatcggaggccttcctgttatgtaacgaat 210

                 
Query: 304 tcatta 309
           ||||||
Sbjct: 209 tcatta 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no271_f10.g1 MSMg01no271_f10.g1 CHROMAT_FILE:
MSMg01no271_f10.g1 PHD_FILE: MSMg01no271_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:11 2005
         (287 letters)



>mm_chr14_75431519_75432205
          Length = 687

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaatcacgcccagtggtacaacggccattggagagctgtgttttgagcacgttcactc 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagtcacgcccagtggtacaacggccattggagagctgtgttttgagcacgttcactc 260

                                                                       
Query: 61  catacctggaaaaatggtgtcccagtccataggctggggagactctcctgtggacctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catacctggaaaaatggtgtcccagtccataggctggggagactctcctgtggacctctg 320

                                                                       
Query: 121 tgaagggagcaaccgtgccttccaggacactgaccaacctgcttgccaattggatgtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagggagcaaccgtgccttccaggacactgaccaacctgcttgccaattggatgtgag 380

                                                                       
Query: 181 gctcctaagacacaaagcttcctggatcaacccgatgtgtgtgcagcagccacttcaaga 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 gctcctaagacacaaagcttcctggatcaacccgctgtgtgtgcagcagccacttcaaga 440

                                                         
Query: 241 attatgcccccaaagaccaaccgtgcagagcaatgagaaccacgtg 286
           |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 attatgcccccaaagaccaaccgtgcagagcagtgagaaccacgtg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)