BAC Information

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BAC

Clone NameMSMg01-272I18
Chromosome14 (Build37)
Map Location 82,842,871 - 82,843,241
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272I18.T7 (MSMg01no272_i18.b1)MSMg01-272I18.TJ (MSMg01no272_i18.g1)
ACCAG411799AG411800
length755759
length of high quality
(start - end)
315 (45 - 359)371 (389 - 759)
definitionCHROMAT_FILE: MSMg01no272_i18.b1 PHD_FILE: MSMg01no272_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:44 2005CHROMAT_FILE: MSMg01no272_i18.g1 PHD_FILE: MSMg01no272_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:44 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTAATGTTCCCTATGTTTCTATTTTGTGGAATAGTTTCAAGGGTA
TTCCTATTAGCTCTTCTTTGCAACTCAGATAGAATTCTGCACTAAAACCA
TATGGCTTTTGTTGATTGGGGGACTTTTAATGACTGTTTCTATTTCTTTG
GGGGTTATTTCTTTAGGGGTTATAGGATTTTTTTTTAGATAGTTTACCTG
ATCTGGATTTAACTTTTGTAGTAGTAATCTATATAAAAAAATGTTCATTT
TATTTAGATTTCCCAATTTGTGATTATAGGCTTTTGAATTAAGACCTAAT
GATTGTTAGAATTTTTTCATTGCCCCGCGCCCCATACCCTTTTTTATTTC
TGATCTTGTTAATTTGAATTCTCTCTCTCTCACTCTCTCTCTCTCTCTCT
CACACACACACACACACACACACACACACACACACACACACACACACTTT
TAGCTAATTTTCCTAATTTAGCTATCTTATTGATTTTCTTAAAAAACTAC
TCTTGGCCTTGTTGATTCTGCGTACTACTCTCTTTGCTTCTATTTTTTTT
TAAATTTCAGACTTGAGTTTTACTATTTCCTTCCATCAATTTCTCTTGCG
TGTTTTTGTCTGTTTTCTACGCATTTACATTGCTAGCACGGTAACTCCCT
CCTCCCCTTTTTAAGCCCTTTACTATCATGAACTTTTCCCTTACCAACTG
TTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCATAGCAAAAATATTTAATATT
TTTATTTCATGTTGTACCATAATTTGAATAAAATTTCTTTAGCACAATAT
TATGCAATGTGTTACAGAGATAACCAGTTAAATAAATCAAATGTTGTGTT
TCATATGAATAAATATATATGATATAAAACAATATAGATGTAGATTTTTG
TGTGGCTGTTTTAGACAAATTTATTGAAGTCTGTACATTTAATTGATACT
GCATTTGCATAATGATCAGTATAAGGCAGCCCTGTGACAGTCACACTTTT
ATTAAATCAGGCCCTACTTCTGTGCACGCGCACCCCATACAAATATGAAG
AAAGTAAAAGAAAACTGGCATTTTAAAAACATTTTCATAGTTTTTGAAAT
CATTTCAGAATACCTATTGGAATAATTAATATTTTGGTGAACAAGAAGAA
TAAATGCAATCACTGTCTACAAACAGTGGCAAAGAGCATACCAGGTCATC
TCCAGAGAACACATAAAATTTAATGAAATTCACTATTAAATTCATGTGAT
ACTTGATATTTTTAATAACAATAAGTAGAATATTTGTCTGTGAGTAAAAG
CATCATTAATTAGAAAAAAGAAATAAAATTATAGTTTAGAAAAAGAAGAC
ACTGCATCATATCAGAAATGGAGAAACAGATAATATAGAGATTGAATTTA
GTAAAAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_i18.g1 MSMg01no272_i18.g1 CHROMAT_FILE:
MSMg01no272_i18.g1 PHD_FILE: MSMg01no272_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:44 2005
         (371 letters)



>mm_chr14_82842671_82843441
          Length = 771

 Score =  694 bits (359), Expect = 0.0
 Identities = 368/371 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaaatatgaagaaagtaaaagaaaactggcattttaaaaacattttcatagtttttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 acaaatatgaagaaagtaaaagaaaactggcattttaaaaacattttcatagtttttgaa 512

                                                                       
Query: 61  atcatttcagaatacctattggaataattaatattttggtgaacaagaagaataaatgca 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 511 atcatttcagaatacctattggaataattaatattttgctgaacaagaagaataaatgca 452

                                                                       
Query: 121 atcactgtctacaaacagtggcaaagagcataccaggtcatctccagagaacacataaaa 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 451 atcactgtctacaaacagtggcaaagagcataccaggccatctccagagaacacataaaa 392

                                                                       
Query: 181 tttaatgaaattcactattaaattcatgtgatacttgatatttttaataacaataagtag 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 391 tttaatgaaattcactattaaattcatgtgatacttgatatttttattaacaataagtag 332

                                                                       
Query: 241 aatatttgtctgtgagtaaaagcatcattaattagaaaaaagaaataaaattatagttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aatatttgtctgtgagtaaaagcatcattaattagaaaaaagaaataaaattatagttta 272

                                                                       
Query: 301 gaaaaagaagacactgcatcatatcagaaatggagaaacagataatatagagattgaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gaaaaagaagacactgcatcatatcagaaatggagaaacagataatatagagattgaatt 212

                      
Query: 361 tagtaaaagta 371
           |||||||||||
Sbjct: 211 tagtaaaagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)