BAC Information

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BAC

Clone NameMSMg01-272K06
Chromosome14 (Build37)
Map Location 84,850,759 - 85,010,270
singlet/doubletdoublet
Overlap genePcdh17, 9630013A20Rik
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
Downstream geneLOC629794, LOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272K06.T7 (MSMg01no272_k06.b1)MSMg01-272K06.TJ (MSMg01no272_k06.g1)
ACCAG411870AG411871
length739745
length of high quality
(start - end)		329 (45 - 373)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no272_k06.b1 PHD_FILE: MSMg01no272_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:50 2005CHROMAT_FILE: MSMg01no272_k06.g1 PHD_FILE: MSMg01no272_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,850,759 - 84,851,084)(85,009,980 - 85,010,270)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATAGTCTTGTCTCTAGCTCATTTGTTAGCATTTGCATCAGTCGGC
CTGCCACTTAAATATGCTACTAATTTCATGTCTCTTTCTTAAAGTAGACT
CGTATTCCCCCAAATCAAATTGGATCAACAGCTTGTAGCTCTGGGTCATC
TTCATTTTTCATTTTCTTGCTTAGAGTTTTGAAAGTACATAGTATAGCTT
TAGAAATGGGTTAAAAATATTTCATAGTTATGTTGTAATACTCATGTACA
ATAAGGAGATATGAAATATAGGAACTTTGGTGCAGTATGGCTCACATTAT
AGCTAAAGTAAAAAGTGATTATAGTCTGTGAGTGTTTTGATCACAGGGCC
CAAGGTTCATGCTTCAAGTTTTTGTTTAATCTCAGGTGTATACATATTAA
CACAGATATGTGAAGAGAGATTTTATTTTTATTAAATCCTGTGAATCAGG
CTATAAAGTTTTTAGACAATAGATGTGTGACTGGAATATCAATAATTGCA
CAAGAATTATACTACTACTTTGAAGTTATAATGTGATATTTTATTTATTC
TAAGCTATAGATCTTAAATAGATTTTCTAGTGCGTAATTGTAGTCTATCT
CATGCATGTATTATAGTCTGTTTTTTTCGCACACCTTTCCCTTGTTACTA
ATTTGTGCATTGATTTTATATATCCCCCGCATGTTTAAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCATAACTATTGTAAATCTCCCA
ATTGAGTTGAATTAATTTCAACACTTGCTCAAAATTCCACAAATAAATAA
ATGTCCTATAATCAATAGTATAGAATTCTTGTAATCTACTCTTCTCTTTC
CAGATATCAAAATGTCTGAATATTGTCTGCAATGCCTACCTATGCGATTA
ATCCTCACACATATATTAGCAAACAAAATTCTCACTGAAAGAATCAACAA
TACCACAGGAATGGATTCATAGGCTGCAAAATGTCAGAAAGTGTGAAGTG
TATACTCAGATAAATATTTATTGTGCACTCACCCAATAAATCAAAATTAT
ATGAACTCACATACTGATTGTAATTGCTGGCCTTTCAACAATTCAATCAA
CATATTCATATTTAGGAAAGCACAAAAATAGCCAAGCCTAACTTTCAAGC
AAATGACAAGTATTCTTTCTTCCTGTGCCCTTGATTTACTTTCTATATTG
TCTTTAAACCCCTAAGAAAAATAACATCCTTATCCAATGCTCTATTATTT
TTTAACGTTGAGCAGAACTGAACTGTAGTATAATGAAGGAACTCACAGTT
TTGAGTCAATACTCTGATCACTTAGATATAAAGAATCCAGAAAACCAAAG
TGTCAGATAGTATTCCTAAGAACCCAATGGTACATATTCCTGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_k06.b1 MSMg01no272_k06.b1 CHROMAT_FILE:
MSMg01no272_k06.b1 PHD_FILE: MSMg01no272_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:50 2005
         (329 letters)



>mm_chr14_84850556_84851284
          Length = 729

 Score =  623 bits (322), Expect = 0.0
 Identities = 325/326 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatagtcttgtctctagctcatttgttagcatttgcatcagtcggcctgccac 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatagtcttgtatctagctcatttgttagcatttgcatcagtcggcctgccac 263

                                                                       
Query: 64  ttaaatatgctactaatttcatgtctctttcttaaagtagactcgtattcccccaaatca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttaaatatgctactaatttcatgtctctttcttaaagtagactcgtattcccccaaatca 323

                                                                       
Query: 124 aattggatcaacagcttgtagctctgggtcatcttcatttttcattttcttgcttagagt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aattggatcaacagcttgtagctctgggtcatcttcatttttcattttcttgcttagagt 383

                                                                       
Query: 184 tttgaaagtacatagtatagctttagaaatgggttaaaaatatttcatagttatgttgta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttgaaagtacatagtatagctttagaaatgggttaaaaatatttcatagttatgttgta 443

                                                                       
Query: 244 atactcatgtacaataaggagatatgaaatataggaactttggtgcagtatggctcacat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atactcatgtacaataaggagatatgaaatataggaactttggtgcagtatggctcacat 503

                                     
Query: 304 tatagctaaagtaaaaagtgattata 329
           ||||||||||||||||||||||||||
Sbjct: 504 tatagctaaagtaaaaagtgattata 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no272_k06.g1 MSMg01no272_k06.g1 CHROMAT_FILE:
MSMg01no272_k06.g1 PHD_FILE: MSMg01no272_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:51 2005
         (293 letters)



>mm_chr14_85009780_85010472
          Length = 693

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcataactattgtaaatctcccaattgagttgaattaatttcaacacttgctcaaaatt 60
           |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 491 ttcataactattataaatctcccaattgagttgcattaatttcaacacttgctcaaaatt 432

                                                                       
Query: 61  ccacaaataaataaatgtcctataatcaatagtatagaattcttgtaatctactcttctc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 431 ccacaaataaataaatgtcctataatcaatagtatagaatacttgtaatctactcttctc 372

                                                                       
Query: 121 tttccagatatcaaaatgtctgaatattgtctgcaatgcctacctatgcgattaatcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tttccagatatcaaaatgtctgaatattgtctgcaatgcctacctatgcgattaatcctc 312

                                                                       
Query: 181 acacatatattagcaaacaaaattctcactgaaagaatcaacaataccacaggaatggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acacatatattagcaaacaaaattctcactgaaagaatcaacaataccacaggaatggat 252

                                                              
Query: 241 tcataggctgcaaaatgtcagaaagtgtgaagtgtatactcagataaatat 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tcataggctgcaaaatgtcagaaagtgtgaagtgtatactcagataaatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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