Query= MSMg01no272_m17.b1 MSMg01no272_m17.b1 CHROMAT_FILE:
MSMg01no272_m17.b1 PHD_FILE: MSMg01no272_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:02 2005
(522 letters)
>mm_chr14_39346474_39347395
Length = 922
Score = 934 bits (483), Expect = 0.0
Identities = 510/519 (98%)
Strand = Plus / Plus
Query: 4 ggaattctatatttcacctcagtacagtattcactccttgtcccaggcagctgctttttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctatatttcacctcagtacagtattcactccttgtcccaggcagctgctttttt 263
Query: 64 gggaagcagaattaccatcaaaatacaaacaacaccagggctatctacaaaaccaactta 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggaagcagaattagcatcaaaatacaaacaacaccagggctatctacaaaaccaactta 323
Query: 124 ttcatttctctcaatttctgtgtttctagtccatattagttaggattttctaagaccaat 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 ttcatttctctcaatttctgtgtttctagtccatattaattaggattttctaagaccaat 383
Query: 184 tctaccattcagcctggccaaacagaattttaattacccctgtgccttaaatgcaaaacc 243
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 384 tctaccattcagcctggccaaacagaattttaattacccctgtgccttacatgcaaaacc 443
Query: 244 acagattaacagtttcctactagttgtctgtgttttgtagatcttcagttcccacatttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acagattaacagtttcctactagttgtctgtgttttgtagatcttcagttcccacatttt 503
Query: 304 aaaaaacatgatgtacatgtgaaaaaggaaataatttgcccttatcaggagggggtttat 363
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 504 aaaaaacatgatgtacatgtgaaaaaggaaataatttgcccttatcaggaaggggtttat 563
Query: 364 tgaagaccacacttcatgtcttcttgtctgtgtctgttacagtaataacaataatagaat 423
|||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaagaggaaatttcatgtgttcttgtctgtgtctgttacagtaataacaataatagaat 623
Query: 424 gtcagtaacttaatgttattcccagaaatgaataaaagaacatacttcccatgtgttggt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtcagtaacttaatgttattcccagaaatgaataaaagaacatacttcccatgtgttggt 683
Query: 484 gatccattaaatcaagttttatgtgaaatactactgcta 522
|||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gatccattaaatcaagttttatgtgaaatactactgcta 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no272_m17.g1 MSMg01no272_m17.g1 CHROMAT_FILE:
MSMg01no272_m17.g1 PHD_FILE: MSMg01no272_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:02 2005
(593 letters)
>mm_chr14_39477344_39478334
Length = 991
Score = 1040 bits (538), Expect = 0.0
Identities = 574/586 (97%), Gaps = 4/586 (0%)
Strand = Plus / Minus
Query: 9 tttctatcccctaagtaatacagagttgatcagaaataggcacccttgattgtatatttt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tttctatcccctaagtaatacagagttgatcagaaataggcacccttgattgtatatttt 732
Query: 69 gaaaaaaaatcatgatttttttgcatgtacttgagatgaggcaaagatatcaccagggga 128
| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 g-aaaaagatcatg-cttttttgcatgtacttgagatgaggcaaagatatcaccagggga 674
Query: 129 gctatcatacattcagtgataagtgaccagaccctaaaatgtgctaaaaagaacctttaa 188
|||||||| |||||||||||||||| |||| || ||||||||||| ||||||||||||||
Sbjct: 673 gctatcatgcattcagtgataagtgcccaggccataaaatgtgct-aaaagaacctttaa 615
Query: 189 gataaatgaatactgaactcatatgtccataataaccttacaatacaaagtatttggaag 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gataaatgaatactgaactcatatgtccataataaccttacaatacaaagtatttggaag 555
Query: 249 tctgattttgaaaacacaaagcaaaacctaatatatcctggtgactaccttaaa-attca 307
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||
Sbjct: 554 tctgattttgaaaacacaaaacaaaacctaatatatcctggtgactacattaaagattca 495
Query: 308 gtatacttttatttactgtcccactagggatttgctgggaggtaggacggtataagagga 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gtatacttttatttactgtcccactagggatttgctgggaggtaggacggtataagagga 435
Query: 368 atggacatttgtcaggatcagaggagctgcttttctctgaaggagccccacatatcacct 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atggacatttgtcaggatcagaggagctgcttttctctgaaggagccccacatatcacct 375
Query: 428 atgtctacccctgtctcatgctgctatcaatcctgctcatggataatggccatcaacttc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atgtctacccctgtctcatgctgctatcaatcctgctcatggataatggccatcaacttc 315
Query: 488 tccaaccttttcaaacattactaatttttgttactctctacaaacagtaggaagtctata 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tccaaccttttcaaacattactaatttttgttactctctacaaacagtaggaagtctata 255
Query: 548 gattatctgtctccatttcttcttttaatcacccttacccacccat 593
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gattatctgtctccatttcttcttttaatcacccttacccacccat 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 991
Length adjustment: 10
Effective length of query: 583
Effective length of database: 981
Effective search space: 571923
Effective search space used: 571923
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
