BAC Information

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BAC

Clone NameMSMg01-273J07
Chromosome14 (Build37)
Map Location 111,489,318 - 111,489,607
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273J07.T7 (MSMg01no273_j07.b1)MSMg01-273J07.TJ (MSMg01no273_j07.g1)
ACCAG412542AG412543
length730738
length of high quality
(start - end)
577 (41 - 617)289 (68 - 356)
definitionCHROMAT_FILE: MSMg01no273_j07.b1 PHD_FILE: MSMg01no273_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:59 2005CHROMAT_FILE: MSMg01no273_j07.g1 PHD_FILE: MSMg01no273_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATGAAATTCTTACGCAAATGGATGGATCTGGAGGATATCATCCTGAGTGA
GGTAACCCAATCACAAAAGAACCACATGGTATGCACTCACTGATAAGCAG
ATATTAGCTCAGAAACTTAGAATATCTGAGATACAATTTGCAAAACATAT
GAAACTCAAGAAGAAGGAAGACCAAAGTGTAGATACTTTGATCCTTCTTA
GAATGGGGAACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTCAGA
GCTAAGATAGAAGGAAAGACCAACTATTGCATATGCCAGAAAGATTTTGC
TGACAGGACCCTCCCTGATATAGCTGTCTCTTGTGAGGCTATTCCAGTGC
CAGGAAAATACAGAAGTAGATACTCATAGTCATCTATTAGATGGAACACA
GGGCCCCCAATGGAGGAGCTAGAGAATGTACTCAAGGATCTGAAGGGGTC
TGTAACCAAATAGGTGGAACAACATGAACTAACCAATACCCCCAGAGCTC
CTGTCTCTAGCTGAATATGTAGCAGAAGATGGCCCAGTCTGCAATCAATG
GGAAAAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGCACAGGGG
AAACACCAGGCCATGAAGTGTGAGTAGGTGGGCAGGGGAGCAGGCTGGAG
GATCGCATAACTATTATAGGGCGACTTCCC
CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTCCTAATTGGAAAGTCTTCATAAAACTGATT
TTCAAATGCCTCAAGGACACACATCGAATAGAAAGTAGAAATATTTAAAT
GACACGGTAGATGAATGAAACCAAGGAAATAAGCTCTCCATATAAAACAG
CATGGACATATAAAAGAACTTATGAGGAACTTGACAGCACATATAGGGCT
TAGATGGATTAAATTCATACAGGGTTCCAGCCCTAAGAGGAATTATCAGA
TGTTTCTAATTCCAGTGTTTCTGCAGTAAGATAGAAGCAGAAGCGGGATT
TCTAAAATATTTATTGGCGCCCCCACGCCACCTAAAAACAACACTGGGAA
GAGTATGGCAACTTAGCTATGCAATTCCAAATGGTCAGACACTGAAGACA
AAGACATGACTAACAAGAAAAACTGAGAGGTTGTATTTTGTATTTAGAAA
TATATGTGTATACATATATACATATTATGCATATATATCATATCTGTATA
TATACACATGTCCATGCATATGTACACATATACATATATGCACATGTGTT
TTATACATGTGTACATATAAGTAAATATATCTCTACACACATATACATGT
GGCACATTATATACTTATATTCATGAATTGTAGTAACCTACCCAAAATAA
CGAAATGAGAAGACTTGTAAAGAGAGCAAGGAGGAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_j07.g1 MSMg01no273_j07.g1 CHROMAT_FILE:
MSMg01no273_j07.g1 PHD_FILE: MSMg01no273_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:59 2005
         (289 letters)



>mm_chr14_111489118_111489807
          Length = 690

 Score =  433 bits (224), Expect = e-126
 Identities = 275/292 (94%), Gaps = 5/292 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcctaattggaaagtcttcataaaactgattttcaaatgcctcaaggacacacatcga 60
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 actcctaattggaaagccttcttaaaactgattttcaaatgcctcaaggacacacatgga 260

                                                                       
Query: 61  atagaaagtagaaatattt-aaatgacacg-gtagatgaatgaaaccaaggaaataagct 118
           ||||||||||||||||||| ||| |||| | || ||||||||||||||||||||||||||
Sbjct: 261 atagaaagtagaaatattttaaaagaca-gagtggatgaatgaaaccaaggaaataagct 319

                                                                       
Query: 119 ctccatataaaacagcatggacatataaaagaacttatgaggaacttgacagcacatata 178
           ||||||||||||||||||||||| | |||||||||||||| |||||||||||||  ||||
Sbjct: 320 ctccatataaaacagcatggacacacaaaagaacttatgaagaacttgacagcatgtata 379

                                                                       
Query: 179 gggcttagatggattaaattcatacagggttccagccctaagaggaattatcaga-tgtt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 380 gggcttagatggattaaattcatacagggttccagccctaagaggaattatca-agtgtt 438

                                                               
Query: 238 tctaattccagtgtttctgcagtaagatagaagcagaagcgggatttctaaa 289
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 439 tctaattccagtgcttctgcagtaagatagaagcagaagcaggatttctaaa 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 690
Length adjustment: 9
Effective length of query: 280
Effective length of database: 681
Effective search space:   190680
Effective search space used:   190680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)