BAC Information

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BAC

Clone NameMSMg01-273O03
Chromosome14 (Build37)
Map Location 72,321,064 - 72,321,733
singlet/doubletsinglet
Overlap genenone
Upstream geneGfra2, LOC100043132, LOC100043136, LOC668477
Downstream geneLOC668482, LOC675957, Fndc3a, LOC100043721, LOC100043723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273O03.T7 (MSMg01no273_o03.b1)MSMg01-273O03.TJ (MSMg01no273_o03.g1)
ACCAG412768AG412769
length742743
length of high quality
(start - end)
372 (37 - 408)670 (74 - 743)
definitionCHROMAT_FILE: MSMg01no273_o03.b1 PHD_FILE: MSMg01no273_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:20 2005CHROMAT_FILE: MSMg01no273_o03.g1 PHD_FILE: MSMg01no273_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTC
TTACAAGATGAGAGAACAACAACCTACAAACCCATGCCCAGTCTTTCATG
ATGCTTAGTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGT
CTGTGTGAGTGAATATGAATGTGTGTTTATGTTCTGGGTTGTTTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCTGCTT
CTGCTTCTGCTTCTCCTGCTCCTGCTTCTTCAGCTTCTTCTGCTTCTGCT
TTTTTTTTTCCCCCCCCCCCCCCTCCTTCTCCTTCTCTCATGCNTTATAT
TCTGACCCCCCCTTACACAAAAAATCACTCTCCTCAGTTCTCCCCACTAC
CTCCTGTCTCCTCTAGATCTACTCTACCTCTCTATTTTCCCTCTCACTGA
CAGACGCAGACTTTATATCCGATTTCCCCTCTCCTTTTTATCCTCTCTCT
CCACGTTATTCTACTTCCTCCTTTTTCCCCCTCCCCCCTTCCTTTCAACG
CTTTGACTTCCTGTCCGTCCTATTTTTTCCCCCTTTTTTCCCCCCTCCTT
CCCCTTTTATCCCTCCCCCCTTTCCCCTTTTCTTCCCCCTCCCTCCCCCT
CCCTCCTTCCTCTTCACACTTTCTTTCGCTTCTCTCTCCCTA
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGGATTGGAAGATAGAGAGGCTGAAACA
AGACAGGGCAGTTACAGGGGCTGTTTGGAAGGAAACCTGGGGTCAGGAAA
AGGACGAGGCCACTCAGCTACCTGCAGATGAAACAAGGAAAATGGATGCT
GGAATAGAAGGGTCAAGCACTGCACAGGGTTAGAGCAGAGCATCCAATAA
GAGGCAATGTCACTAACTCCACCAGGAGCACCAGCTCTGAGAAGGCTTGG
GACGTGTTCACCTTGGGGAGAATGCGGTCTCTGCTTATTTATGCAAATGT
TTGATTTCCCCATCTCTTACAAAGGAAAGACTTATAATTTCCACAATAGT
CTTATTAATATCTAGGGCCTGGGAAAACAAAAGTGATGTTTAGACTTCAG
GCTTTTAAATCTTCCAATTTACACCGCTCCATGCCTCGCTAAATTCACCA
CACTGAAGATCGTTTGATGTTCAGCAAGCTCTCTCCACACTCCTTTCCCC
TTGATAAAACATTAAATCAGTGTATTTCCCACCCCACCCCTCCCTTTTGC
TCTCTAAAGATGAGTTTTTCTGGTAACTGAAATTCTGTTTAAATATGTAG
AGTTCTAAAGGGAGCAACGGCTGCCGTAGTGATATTTCAAATCGTTAGAC
GTTGTGACTTTAGGCTGTAAAATAGACACCTATTAAAGTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_o03.g1 MSMg01no273_o03.g1 CHROMAT_FILE:
MSMg01no273_o03.g1 PHD_FILE: MSMg01no273_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:20 2005
         (670 letters)



>mm_chr14_72320864_72321933
          Length = 1070

 Score = 1280 bits (662), Expect = 0.0
 Identities = 668/670 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggattggaagatagagaggctgaaacaagacagggcagttacaggggctgtttggaagga 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 870 ggattggaagatagagaggctgaaacaagacagggcagttaaaggggctgtttggaagga 811

                                                                       
Query: 61  aacctggggtcaggaaaaggacgaggccactcagctacctgcagatgaaacaaggaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 aacctggggtcaggaaaaggacgaggccactcagctacctgcagatgaaacaaggaaaat 751

                                                                       
Query: 121 ggatgctggaatagaagggtcaagcactgcacagggttagagcagagcatccaataagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ggatgctggaatagaagggtcaagcactgcacagggttagagcagagcatccaataagag 691

                                                                       
Query: 181 gcaatgtcactaactccaccaggagcaccagctctgagaaggcttgggacgtgttcacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gcaatgtcactaactccaccaggagcaccagctctgagaaggcttgggacgtgttcacct 631

                                                                       
Query: 241 tggggagaatgcggtctctgcttatttatgcaaatgtttgatttccccatctcttacaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tggggagaatgcggtctctgcttatttatgcaaatgtttgatttccccatctcttacaaa 571

                                                                       
Query: 301 ggaaagacttataatttccacaatagtcttattaatatctagggcctgggaaaacaaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ggaaagacttataatttccacaatagtcttattaatatctagggcctgggaaaacaaaag 511

                                                                       
Query: 361 tgatgtttagacttcaggcttttaaatcttccaatttacaccgctccatgcctcgctaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgatgtttagacttcaggcttttaaatcttccaatttacaccgctccatgcctcgctaaa 451

                                                                       
Query: 421 ttcaccacactgaagatcgtttgatgttcagcaagctctctccacactcctttccccttg 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttcaccgcactgaagatcgtttgatgttcagcaagctctctccacactcctttccccttg 391

                                                                       
Query: 481 ataaaacattaaatcagtgtatttcccaccccacccctcccttttgctctctaaagatga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ataaaacattaaatcagtgtatttcccaccccacccctcccttttgctctctaaagatga 331

                                                                       
Query: 541 gtttttctggtaactgaaattctgtttaaatatgtagagttctaaagggagcaacggctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtttttctggtaactgaaattctgtttaaatatgtagagttctaaagggagcaacggctg 271

                                                                       
Query: 601 ccgtagtgatatttcaaatcgttagacgttgtgactttaggctgtaaaatagacacctat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ccgtagtgatatttcaaatcgttagacgttgtgactttaggctgtaaaatagacacctat 211

                     
Query: 661 taaagtacat 670
           ||||||||||
Sbjct: 210 taaagtacat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)