Query= MSMg01no273_o22.b1 MSMg01no273_o22.b1 CHROMAT_FILE:
MSMg01no273_o22.b1 PHD_FILE: MSMg01no273_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:24 2005
(320 letters)
>mm_chr14_25972606_25973322
Length = 717
Score = 381 bits (197), Expect = e-110
Identities = 291/343 (84%), Gaps = 41/343 (11%)
Strand = Plus / Plus
Query: 11 ctatggagagatcctaactcaaacagaagaaatgtctgaaaagatagctgagattgtttt 70
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 177 ctatggagagatcctaactcaaacagaagaaatatctgaaaagatagctgagattgtttt 236
Query: 71 ctgggctccacagacatttaaatacatgtgcgtgcacacacacatacacacacaca---- 126
||||| |||||||||||||||||||||||| |||||| |||||| |||||||||||
Sbjct: 237 ctgggatccacagacatttaaatacatgtgagtgcacgcacacacacacacacacagaga 296
Query: 127 --------cacaca--cagagagagaga------gaga--gagagagagacagagagaca 168
|| ||| |||| ||| ||| |||| |||||||||||||||||| |
Sbjct: 297 gagagagacagacagacagacagacagacagacagagacagagagagagacagagagaga 356
Query: 169 --------gagagacagagacagaga----cagagacagagacagaggggggaggg--gg 214
|||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct: 357 tagggagagagagacagagagagagagagacagagacagagacagaggggggagggaggg 416
Query: 215 gaagatatggatctgctacccatggtcaatgcagcgtgaatcaatgatagtagaatcact 274
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct: 417 gaagatatggatctgctacccatggtcaatgcagcgtgaatcgatgatagtag---c-ct 472
Query: 275 tttgttctccttcctctgaggttctttggactccagaaaggga 317
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tt-gttctccttcctctgaggttctttggactccagaaaggga 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 717
Length adjustment: 9
Effective length of query: 311
Effective length of database: 708
Effective search space: 220188
Effective search space used: 220188
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no273_o22.g1 MSMg01no273_o22.g1 CHROMAT_FILE:
MSMg01no273_o22.g1 PHD_FILE: MSMg01no273_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:24 2005
(288 letters)
>mm_chr14_26122154_26122844
Length = 691
Score = 416 bits (215), Expect = e-121
Identities = 278/317 (87%), Gaps = 34/317 (10%)
Strand = Plus / Minus
Query: 1 cacatggcctgttaggctatcaattcttttga-gaaaagaagttgataaatggcctgt-g 58
|||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| | |
Sbjct: 351 cacatgccctgttaggctatcaattcttttgaggaaaa-aagttgataaatggcct-tcg 294
Query: 59 gtgaccctcaaactcttgtgttccaagggacgatgaaacgcacaatctaacctg---ttc 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 293 gtgaccctcaaactcttgtgttccaagggacgatgaaacgcacaatctaacctgttcttc 234
Query: 116 tgggccacctttgatgagcagaagatcttggaactctctctctctctctc---------- 165
|| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tgagccacctttgatgagcagaagatcttggaactctctctctctctctctctctctctc 174
Query: 166 ----------------tctctctctctctctctctctctctctcattttctctctctctc 209
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tctctctctcactcattctctctctctctctctctctctctctcattttctctctctctc 114
Query: 210 taggcttaatttgccctcctttaaagtaaggccaagacttttttttttttttttaacttc 269
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 113 taggcttaatttgccctcctttaaagtaaggctaagactcttttttttttttttaacttc 54
Query: 270 caaaa-gcactgagggt 285
||||| || ||||||||
Sbjct: 53 caaaaagctctgagggt 37
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 691
Length adjustment: 9
Effective length of query: 279
Effective length of database: 682
Effective search space: 190278
Effective search space used: 190278
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
