BAC Information

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BAC

Clone NameMSMg01-275F15
Chromosome14 (Build37)
Map Location 108,900,487 - 108,900,855
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668752, EG668754, LOC668757
Downstream geneEG668761, Slitrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275F15.T7 (MSMg01no275_f15.b1)MSMg01-275F15.TJ (MSMg01no275_f15.g1)
ACCAG413830AG413831
length780729
length of high quality
(start - end)		370 (72 - 441)222 (78 - 299)
definitionCHROMAT_FILE: MSMg01no275_f15.b1 PHD_FILE: MSMg01no275_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:04 2005CHROMAT_FILE: MSMg01no275_f15.g1 PHD_FILE: MSMg01no275_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGTGATAACTGTATGCCAAATCATGTCCTTAGGCCATTACCT
CATCACATACAGAAATGATGTCAAAATGAGTTACTCTTCTAAGCAAACAC
TAATCCCCCAAAGAGTTTTAAAATAAAGTTTCAAAAATCTTTGGGGGAAA
CAGAAGAATGGTTTCCTGGCATGGTATATGTTAATGAGTTATTTATCAAA
ACACTGGAAACACAATAAAGAGTAACAATAAGAATAACAAAAAATGCAAC
CATGACAACCACAAATTTAATTTATATGTGGAGCTAAAGCAACTGATAAT
AAGTAAAATGCTGAATGTGATAAAGTGTGTGTTAGCTGTTTGCATGATAT
TTAATATTGGTAGCATGCACAGAGCTCTTACAACAGATAGTATAGAATCA
GACAAGTGATAAAACCGGAAAAATACTTGTTATTTTNTTCTTTTTAAGGT
TGACATAGTGATAATCAACATCTAAGATTGTCACTCAACCCCTATAATTC
TTGAAGTGTCTTGGAACAAACCTATGTTGCATAATATTTATCATCTGTAT
CCAAATCTACGCTTTTCCCGGTAATTGTCCTCTTCCTATAAAAAAATAAA
AAATAATTTGTAAGCCCTCTCTTCTTTAATTTTTATCTCTCTACTATTTT
TTCACTTATTTTTAATAATCTCTTAACAAGTATTTATATCGCCTTCATTT
CGACTCTCGCCCCATCTTTCTCTCTTTTTG

NCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGAGCCCTAACTAGAGGAATT
TGATGCTTTTTTAAAATTAAGATCTTTCTACAATGCACATTAAAATCAGG
GCTAGTCGGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGT
TTTGTTTTGACACAGGATTATTTCAGCTATCCTGGATGTTTTTGTTTCCA
TATGAAGGTGACTCTTACCCTTTTGAGATGTTTGTAGAATTGTGTTTGGA
ATGAAAGATGGGAAATTATAATATCCCTTAAGGTAAAAAAGGGGGTAACT
TTTTCCCCTTTTTTTAAAACCCCAAAATTTTTTTTTTTTTTTGGCGAAAA
AAAAAAAAAGTTTGTTTTTTTAAAAAATATTTTTTGTTGGTGGGAAAATA
TATTTTATCTTATACAAATCGCTTTTTTTCCTCTTCATTCCCCGCCACCT
CCCGACCCTTAGATATTATCATTTCTTCCCTCCTTCTTCTTTTCCTTATT
TTCTTCATTAAACATATAATCATACCCTTCACAAATGACTTAACTAATCT
ACTTTCCTCCTTATTCTTTTTCCTATTCTTCACTTTATCCTCTCAAATCT
TAACTCATCATTCTCTCTCCTCCTTTATCCCTTATCCCTTTCCCCCTTTT
TTTTTCTCTTTTCCCTACTTTTACTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_f15.b1 MSMg01no275_f15.b1 CHROMAT_FILE:
MSMg01no275_f15.b1 PHD_FILE: MSMg01no275_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:04 2005
         (370 letters)



>mm_chr14_108900286_108901055
          Length = 770

 Score =  629 bits (325), Expect = 0.0
 Identities = 358/369 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   gccaaatcatgtccttaggccattacctcatcacatacagaaatgatgtcaaaatgagtt 61
           |||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||
Sbjct: 202 gccaaatcatgtccttagaccattacctcatcacatacagaaatgaagccaaaatgagtt 261

                                                                       
Query: 62  actcttctaagcaaacactaatcccccaaagagttttaaaataaagtttcaaaaatcttt 121
           ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 262 actcttctaagcaaacactaatctcccaaagagttttaaaacaaagtttcaaaaatcttt 321

                                                                       
Query: 122 gggggaaacagaagaatggtttcctggcatggtatatgttaatgagttatttatcaaaac 181
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 322 gggggaaacagaagaatggtttcctgtcatggtatatgttaatgagttatttatcaaaac 381

                                                                       
Query: 182 actggaaacacaataaagagtaacaataagaataacaaaaaatgcaaccatgacaaccac 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 actggaaacacaataaagagtaacaataagaataacaaaaaatgcaaccatgacaaccac 441

                                                                       
Query: 242 aaatttaatttatatgtggagctaaagcaactgataataagtaaaatgctgaatgtgata 301
           | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 442 acatttaatttatatgtggagctaaagcaactgataataagtaaaatgcagaatgtgata 501

                                                                       
Query: 302 aagtgtgtgttagctgtttgcatgatatttaatattggtagcatgcacagagctcttaca 361
           |||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct: 502 aagtgtgtgttagctgtttgcacgatatttaatattggtagcatgtaaagagctcttaca 561

                    
Query: 362 acagatagt 370
           |||||||||
Sbjct: 562 acagatagt 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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