BAC Information

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BAC

Clone NameMSMg01-275F24
Chromosome14 (Build37)
Map Location 102,085,109 - 102,085,445
singlet/doubletsinglet
Overlap geneUchl3
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6
Downstream geneLmo7, LOC100043795, LOC545567, LOC669278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275F24.T7 (MSMg01no275_f24.b1)MSMg01-275F24.TJ (MSMg01no275_f24.g1)
ACCAG413845AG413846
length722717
length of high quality
(start - end)
338 (385 - 722)330 (388 - 717)
definitionCHROMAT_FILE: MSMg01no275_f24.b1 PHD_FILE: MSMg01no275_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:06 2005CHROMAT_FILE: MSMg01no275_f24.g1 PHD_FILE: MSMg01no275_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTATCATCTCTTGATATTTACAGCTATACATATATATA
TATATACATATATACATATATATATGTATCTATACACACACATACATATT
ATAATAGTTGACTGATAATTTTAGCTTACAAGAGAAATAATAAAATTTGC
AGGACACCTATATCAGCACACAAGGAGCAAATTTCCACCTCCTGATTGGA
AAGATTAGAAACTGAACTGGCAGGAAAGATTGGACCAAGATTAAGCCAAA
CACCTGAGCCACATCAAGGAATAAAGGTAGCTTAGATGCAACACACTACA
CCATGAAGGGTTTATATTTATGACACACTACCCACAGCAATCCAGAGGAT
GGCAAGAGAGTAGTCATGCTCAGAAATAAGAAAAAATAATAAAGGAATAG
ATGGCAAAGAACTCAGAGGTACATAGCATTTGTTGCCCTAAGTTATCTAA
GTGAAATCGGAGCGTTGAAGGATAAAGAAACACACACACACTTTAACAGT
TCACAGAAACTTAGTGTTATTACAAATGCCAGTCAGTACTCAGCAATAGG
CAGGGACCCACAGATTCACAGACTATGGAGTGGAAAGATGGATATTCACC
AAGGCGCAAGCAAAAGTCAAGCCAGACTGCAGAGCATGGAGGTATGCTTG
CAATTTTATTGGGGCAGAAAAA
NNNTTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAAACCTT
CCTAGCAGAAGAGCACACACCAAGGAGAGACGACAAGGCATGAACTACAC
TTGAGCAGGGCAGGGGCTACAGAGGAAAAGCAAGGAGGACCAGATCAAGG
GAATGGAAGGCCAAACAGGAAATCTAAGGAGAGGGTGCTATCCAGCTTCC
TCTTGTCCGATGTTGAAGAACAACGTAAAATAAATGGAATGGAGCCGCAC
TTTTTGTCTATCCTGATCCAACTATCACAATAGCGTGTGCTTTAGAGTAA
ACTTTGAAAATGATGATANATATCCCCTCCTCACCACTTCCAAATTATTG
AGAGAGTATTGTTAATCTCTTCTTTTTAAAAAAAAAACTCTTGAATTAGC
TTATACATTTCCGTAAGGAAACCCTATTGGAATTCCAATAGGGATTAATT
GGCTTGAATCTGTAGATAACTTAAAAACGTCCCTTTTTCTTCCCATCCGT
GATCGTGTAATCATGTTTGCTTAGGTCTTCACTGTTTGCAACGATCTCTA
CAAGTTTGTGTATGAATTTCACGTCTCTTTTTTTAAATTCATTCAAATGT
TTTAGTATGAATAGAATTTTCCATAATATCACTTTTACTTATTTACAGTC
TATGGAAAGACAGTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_f24.b1 MSMg01no275_f24.b1 CHROMAT_FILE:
MSMg01no275_f24.b1 PHD_FILE: MSMg01no275_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:06 2005
         (338 letters)



>mm_chr14_102084908_102085645
          Length = 738

 Score =  636 bits (329), Expect = 0.0
 Identities = 335/337 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   agcaatccagaggatggcaagagagtagtcatgctcagaaataagaaaaaataataaagg 61
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 538 agcaatccagaggatggcaagagagtagtcatgctcagaaataggaaaaaataataaagg 479

                                                                       
Query: 62  aatagatggcaaagaactcagaggtacatagcatttgttgccctaagttatctaagtgaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aatagatggcaaagaactcagaggtacatagcatttgttgccctaagttatctaagtgaa 419

                                                                       
Query: 122 atcggagcgttgaaggataaagaaacacacacacactttaacagttcacagaaacttagt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atcggagcgttgaaggataaagaaacacacacacactttaacagttcacagaaacttagt 359

                                                                       
Query: 182 gttattacaaatgccagtcagtactcagcaataggcagggacccacagattcacagacta 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gttattacaaatgccagtcagtactcagcaataggcagggacccacagattcacagacta 299

                                                                       
Query: 242 tggagtggaaagatggatattcaccaaggcgcaagcaaaagtcaagccagactgcagagc 301
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tggagtggaaagctggatattcaccaaggcgcaagcaaaagtcaagccagactgcagagc 239

                                                
Query: 302 atggaggtatgcttgcaattttattggggcagaaaaa 338
           |||||||||||||||||||||||||||||||||||||
Sbjct: 238 atggaggtatgcttgcaattttattggggcagaaaaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)