BAC Information

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BAC

Clone NameMSMg01-275G18
Chromosome14 (Build37)
Map Location 39,179,135 - 39,179,422
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382871, LOC382872
Downstream geneNrg3, LOC100041521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275G18.T7 (MSMg01no275_g18.b1)MSMg01-275G18.TJ (MSMg01no275_g18.g1)
ACCAG413878AG413879
length758755
length of high quality
(start - end)
708 (41 - 748)290 (70 - 359)
definitionCHROMAT_FILE: MSMg01no275_g18.b1 PHD_FILE: MSMg01no275_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:09 2005CHROMAT_FILE: MSMg01no275_g18.g1 PHD_FILE: MSMg01no275_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGGCCCATACCCAAACATGATAAAAGCAATCTACAGCAAACCAATAGCC
AACATCAAAGTAAATGGTTACAAGCTGGAAGCAATCCCACTAAAATCAGG
GACTAGACAAGGCTGTCCACTCTCACCCTACCTATTCAACATTGTACTTG
AAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAGATCAATGGGATACAA
ATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGT
ATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAGCCTGATAA
ACAGCTTCAATAAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATG
GCCTTTCTGTACACAAAGGATAAACAGGCTGAGAAAGAAATTAGGGAAAC
AACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGCATGACTC
TAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCTAAAG
AAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATG
GACTGGCAGGATCAAATCTGTAAAAATGGCCATCTTGCCAAAAGCAATCT
ACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAA
TTAGAAAGGACAATCGGCAGATTAATCTGGAATAACAAAAAACTGAGGAT
AGCAAAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTGACAAAATGGCCATACAAACAGTAAAAT
AGAGAGCAGGCTTCTTGCCCTTTGATAATTGTTTTCTGTGAATACCTGTA
TGGATTGCATGTGTATTGTTGCCAAAGAAAGAACTGTGTGAAGAGAAACA
ACCTGAATTTGTTGAAAATGAATTAGACATACATCTTTGTGAAAGTTTCT
AATTGCAGGTAAGAGTGGTCCCTGGGCCTCATCTGTGTTATAAAAGGAAT
GTGATGTTGTATTTCATCTTATTTTTTTTTCAGTCAAACATCTTGTTCTC
CAGTTTTTTCTATATGTTCCACCACCCTCCAGCACTGTTTTTATGTAGTT
TGTGCCTATAGATTTATCTCACAAAGTCTTATGAAAGTCTTAGCCTATGT
ATCAATCAATAAGATTGGCATGTGTAACAGCACATGCCATGGATTAATAG
GGTTGTTGCTATGGTTAGACTTAGGGCAACTTTACCAAGATCAGGAGACG
AAGATGGATGGCCAAGAAACATGTGATTCTGAAACTTGAGAATCACAGGT
CAAACTTTGCTTCACATTTGTCTTAAATGAAATGTGAGAGTTTTTCAATA
ACAGAGCAAAGCCTCACCACACCAGGCAGGAGAACATAATTGTGTCCTTC
ACTTACATACATACTAGACAGATGCATTTGTTATAAAAAGTAAAACATAT
ATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_g18.g1 MSMg01no275_g18.g1 CHROMAT_FILE:
MSMg01no275_g18.g1 PHD_FILE: MSMg01no275_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:09 2005
         (290 letters)



>mm_chr14_39178935_39179622
          Length = 688

 Score =  518 bits (268), Expect = e-151
 Identities = 284/290 (97%), Gaps = 2/290 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgacaaaatggccatacaaacagtaaaatagagagcaggcttcttgccctttgataat 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agtgacagaatggccatacaaacagtaaaatagagagcaggcttcttgccctttgataat 429

                                                                       
Query: 61  tgttttctgtgaatacctgtatggattgcatgtgtattgttgccaaagaaagaactgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgttttctgtgaatacctgtatggattgcatgtgtattgttgccaaagaaagaactgtgt 369

                                                                       
Query: 121 gaagagaaacaacctgaatttgttgaaaatgaattagacatacatctttgtgaaagtttc 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gaagagaaacaacctgagtttgttgaaaatgaattagacatacatctttgtgaaagtttc 309

                                                                       
Query: 181 taattgcaggtaagagtggtccctgggcctcatctgtgttataaaaggaatgtgatgttg 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 taattgcaggtaagagtagtccctgggcctcatctgtgttataaaaggaatgtgatgttg 249

                                                             
Query: 241 tatttcatcttatttttttttcagtcaaacatcttgttctccagtttttt 290
           |||||||||||  ||||||||||||||||||||||||| |||||||||||
Sbjct: 248 tatttcatctt--ttttttttcagtcaaacatcttgttgtccagtttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 688
Length adjustment: 9
Effective length of query: 281
Effective length of database: 679
Effective search space:   190799
Effective search space used:   190799
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)