BAC Information

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BAC

Clone NameMSMg01-275H15
Chromosome14 (Build37)
Map Location 49,642,771 - 49,790,675
singlet/doubletdoublet
Overlap geneExoc5, 4932432K03Rik, LOC218997
Upstream geneMap1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972
Downstream geneNat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275H15.T7 (MSMg01no275_h15.b1)MSMg01-275H15.TJ (MSMg01no275_h15.g1)
ACCAG413920AG413921
length751751
length of high quality
(start - end)		698 (46 - 743)604 (76 - 679)
definitionCHROMAT_FILE: MSMg01no275_h15.b1 PHD_FILE: MSMg01no275_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:13 2005CHROMAT_FILE: MSMg01no275_h15.g1 PHD_FILE: MSMg01no275_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,642,771 - 49,643,464)(49,790,072 - 49,790,675)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCACATTACAGTCACAAATAAAACAGCATTATGAATATTGTTCA
ACCAAGCAGAACTAAAAGAGTTCAACAAAAAGTGTAATAGACATATACTT
ACCAGCAAGACCCGTTTCTAAAGCATAATCAATATGCTCAATACATAAAA
ATTCCACAAGAATGGTAAAAATTCTAAAGGCATTCCTTGGTAAATCAGAA
GGATCAGAAAGCTTTAAAAATAAGCAAAAACAGTATTACTCTTCAAGTCT
ACATTGTAATAAAGCCATCTTTTTGTATACAACACTATTTCAGGTAACAT
AATGTGACCGTTCCTGTCTCACTGCCGTACAACTATAATCAGTCCTCTAG
ACTGTTGGTGACCCTCCTGACCTAGGGCAGTGTTAAATCTAGGTTGTAAT
CTTTGAGTAAAACACAATTATACTTTCAAAAAACACACATATGCATATGT
GTACACTCTGATAACAATGTGGGATGCATTTTGAATTGCCAGGATCACAG
TCAAAGAAATTTGAGGACCTCTAACTAACTTAGGCTGTTCTAGTAAAACT
CAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAGATACTTGTG
GAATTAGGCTATGAAGTCAATTAATATACATAGTAATAAAAATACAACAA
AATCAAATTTAACTCATCATATCCTGGTGGAGTAAGTCTTTAGAAGGTTA
T

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGGAAGCCTGGGCTGCATAGCAA
AACTGTTTCTAAAAATAAATACCAAGTAAAAATAAAAATAAATTTCAAGT
GAGATTAACCTGCACTGTGGCATGGTTTGAGACACGAGGGTGACAATCCT
TTTCACTAAGACTATTAAAGGACACCACCAGCTCAAACAGAGAGACTCAG
CCTCTAAAGATGATAAAATGTGTAAGTATCTACCAAGTATTGTACAAAGT
GCCCTCTATACACTACGACTTTTATGAGTTCGTGTCTTACAAAAGTACAT
TCCTGTATAAACAGGCATGAAAACACATATATATTTCAGTTTTCTCAGTA
ATATGGAAGAAATAATTAAGTAGCTATAAATTTGAGAATGACTAAATAAG
CTACTTTGCTTTTTTTTTCTCTGTATGATGTGTGTGCCAACGTGTGTGCC
TGTGTATGTTGGTGAGTGTGTGTGTGTGTGTGTGTGTGAACACACGTGTA
CAGGTATGTTCAGGCCTGAGGATGCTTGACACGGATGTTAGAAATCCTCC
TCCATTGCTTATGTGCCTTGTTCTTTGAGGTGAGCTCTCGAAGTTGAACC
TGAAGCTCCCCAGTAGAGCTAGTTTTTCAAAGCAGATTGCTCCAAAGATC
CTTCTTTCCCACCTGCTCAAGCTGGAATTACACGATCCATCACACCCACC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_h15.b1 MSMg01no275_h15.b1 CHROMAT_FILE:
MSMg01no275_h15.b1 PHD_FILE: MSMg01no275_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:13 2005
         (698 letters)



>mm_chr14_49642567_49643664
          Length = 1098

 Score = 1311 bits (678), Expect = 0.0
 Identities = 690/694 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcacattacagtcacaaataaaacagcattatgaatattgttcaaccaagcag 64
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcacacaaaagtcacaaataaaacagcattatgaatattgttcaaccaagcag 264

                                                                       
Query: 65  aactaaaagagttcaacaaaaagtgtaatagacatatacttaccagcaagacccgtttct 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aactaaaagagtttaacaaaaagtgtaatagacatatacttaccagcaagacccgtttct 324

                                                                       
Query: 125 aaagcataatcaatatgctcaatacataaaaattccacaagaatggtaaaaattctaaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaagcataatcaatatgctcaatacataaaaattccacaagaatggtaaaaattctaaag 384

                                                                       
Query: 185 gcattccttggtaaatcagaaggatcagaaagctttaaaaataagcaaaaacagtattac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcattccttggtaaatcagaaggatcagaaagctttaaaaataagcaaaaacagtattac 444

                                                                       
Query: 245 tcttcaagtctacattgtaataaagccatctttttgtatacaacactatttcaggtaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcttcaagtctacattgtaataaagccatctttttgtatacaacactatttcaggtaaca 504

                                                                       
Query: 305 taatgtgaccgttcctgtctcactgccgtacaactataatcagtcctctagactgttggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taatgtgaccgttcctgtctcactgccgtacaactataatcagtcctctagactgttggt 564

                                                                       
Query: 365 gaccctcctgacctagggcagtgttaaatctaggttgtaatctttgagtaaaacacaatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaccctcctgacctagggcagtgttaaatctaggttgtaatctttgagtaaaacacaatt 624

                                                                       
Query: 425 atactttcaaaaaacacacatatgcatatgtgtacactctgataacaatgtgggatgcat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atactttcaaaaaacacacatatgcatatgtgtacactctgataacaatgtgggatgcat 684

                                                                       
Query: 485 tttgaattgccaggatcacagtcaaagaaatttgaggacctctaactaacttaggctgtt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttgaattgccaggatcacagtcaaagaaatttgaggacctctaactaacttaggctgtt 744

                                                                       
Query: 545 ctagtaaaactcaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaagatacttgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctagtaaaactcaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaagatacttgt 804

                                                                       
Query: 605 ggaattaggctatgaagtcaattaatatacatagtaataaaaatacaacaaaatcaaatt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggaattaggctatgaagtcaattaatatacatagtaataaaaatacaacaaaatcaaatt 864

                                             
Query: 665 taactcatcatatcctggtggagtaagtctttag 698
           ||||||||||||||||||||||||||||||||||
Sbjct: 865 taactcatcatatcctggtggagtaagtctttag 898


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no275_h15.g1 MSMg01no275_h15.g1 CHROMAT_FILE:
MSMg01no275_h15.g1 PHD_FILE: MSMg01no275_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:13 2005
         (604 letters)



>mm_chr14_49790060_49791063
          Length = 1004

 Score = 1160 bits (600), Expect = 0.0
 Identities = 603/604 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaggaagcctgggctgcatagcaaaactgtttctaaaaataaataccaagtaaaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 616 aaaggaagcctgggctgcatagcaaaactgtttctaaaaataaatactaagtaaaaataa 557

                                                                       
Query: 61  aaataaatttcaagtgagattaacctgcactgtggcatggtttgagacacgagggtgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aaataaatttcaagtgagattaacctgcactgtggcatggtttgagacacgagggtgaca 497

                                                                       
Query: 121 atccttttcactaagactattaaaggacaccaccagctcaaacagagagactcagcctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atccttttcactaagactattaaaggacaccaccagctcaaacagagagactcagcctct 437

                                                                       
Query: 181 aaagatgataaaatgtgtaagtatctaccaagtattgtacaaagtgccctctatacacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaagatgataaaatgtgtaagtatctaccaagtattgtacaaagtgccctctatacacta 377

                                                                       
Query: 241 cgacttttatgagttcgtgtcttacaaaagtacattcctgtataaacaggcatgaaaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cgacttttatgagttcgtgtcttacaaaagtacattcctgtataaacaggcatgaaaaca 317

                                                                       
Query: 301 catatatatttcagttttctcagtaatatggaagaaataattaagtagctataaatttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 catatatatttcagttttctcagtaatatggaagaaataattaagtagctataaatttga 257

                                                                       
Query: 361 gaatgactaaataagctactttgctttttttttctctgtatgatgtgtgtgccaacgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gaatgactaaataagctactttgctttttttttctctgtatgatgtgtgtgccaacgtgt 197

                                                                       
Query: 421 gtgcctgtgtatgttggtgagtgtgtgtgtgtgtgtgtgtgtgaacacacgtgtacaggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gtgcctgtgtatgttggtgagtgtgtgtgtgtgtgtgtgtgtgaacacacgtgtacaggt 137

                                                                       
Query: 481 atgttcaggcctgaggatgcttgacacggatgttagaaatcctcctccattgcttatgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 atgttcaggcctgaggatgcttgacacggatgttagaaatcctcctccattgcttatgtg 77

                                                                       
Query: 541 ccttgttctttgaggtgagctctcgaagttgaacctgaagctccccagtagagctagttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  ccttgttctttgaggtgagctctcgaagttgaacctgaagctccccagtagagctagttt 17

               
Query: 601 ttca 604
           ||||
Sbjct: 16  ttca 13


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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