BAC Information

Click to search

BAC

Clone NameMSMg01-276G24
Chromosome14 (Build37)
Map Location 84,105,632 - 84,106,005
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773
Downstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276G24.T7 (MSMg01no276_g24.b1)MSMg01-276G24.TJ (MSMg01no276_g24.g1)
ACCAG414622AG414623
length757762
length of high quality
(start - end)
374 (384 - 757)375 (385 - 759)
definitionCHROMAT_FILE: MSMg01no276_g24.b1 PHD_FILE: MSMg01no276_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:22 2005CHROMAT_FILE: MSMg01no276_g24.g1 PHD_FILE: MSMg01no276_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCAGTCCTACACACAGATTAATTCCTACTATATTTGGGCCTATAT
AAACACATAACAACATACATACCCTCAAACCTACATAACTACATATGTGA
GAATAGCAACATTTTTATAACTTAAGATTCTAATTTATTTAGCCTTTAAC
GATAAATATCAAACCTATTGAAAACAGTGCAGGAATTCTGGATTTTAAAA
AATCCTGTATCACATGAATATATGCATTAGTGTAAAATAAAAATATTATG
AACATACATTTCTATGAATAGAAAAATATATACTTATACAAAATAATTCA
TGGAGATTTATTTATATTTACCACCCCCCACCCAATTATATCATTTATTC
ATAGCAAATGAAGATGTTTTTATTTTTCAAAGCTAACATGTTAATGAATA
TTAATTCAATATTCTTTAAAATTATAATCTTAAAATTTGTTGATTATGGT
TAAAGAAAATCTTAGATGAAGTTAACTAAAACAGTAATTTAAACATGTTC
AATTTATCCATGTATAACACGAGATTCTTGAATACTGAACAAACAGTATA
TACATACCTTTTCAAATGGTAGCATCTTGTAATAGTTACTTTTCTGTTGC
TTTGTTGAACACCATATTCACGATAACTTATAGGAGAAAGGGTTTACTTT
GGATTGGGGCTCCTGAGTGTTAAAGTACACAATAGTAGGGCATCATGGTA
GCATGCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTCTCTTCCATGGTATAAGTGA
CAGCTCAGTTGTTAAAATTTACCCCACAGGATAAGTTTGCATTCATTCAT
TCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTTTATA
CATGTGAAATTAAATATAATAAGACAAAATAAAAACTATCAGATTAAGGT
TGGAAAAGACAAACCAGTAAAAGGAAAACTACCCAAATGGAAGTAAAAAG
AGACCCACTGATTCACATACTCAAATGTCCCATACAAAGTACTAAACTGG
AACCATAATGTATGTTCTTTAATGACTAGCGCACACTTTTGTGGGGCCTG
TGTATGCTGCTTCAGTCTCTGTGAGTTCAAATGTACATTTAAGTTGATTT
AAAGAGCCTTCTTTTGCTTGGTGTCCTCTATACCTCTGGCTCTTAGACTC
TTTCTGTGGTTGAGGTTCTCTGAACTCCAAGGGAAGGAACTTTATGAAGC
TATCCCATTTAGGGCAAAGTATCCCAAGGTTCCTTACTGTCTTCTTAACA
TCTGGTTATGAGTCTCTCCATTTGTTTCCATCTGCTGCAGAAGGAAGCTT
CCATGATGATGAGGGAGTAATGCTCAAATCTGTGAGTACAGCAGACTGTC
ATTTGCAATCATTTTATCACTTCTGTCTTTAAAACCGTGATACATGCTTT
TATCCTAGGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_g24.b1 MSMg01no276_g24.b1 CHROMAT_FILE:
MSMg01no276_g24.b1 PHD_FILE: MSMg01no276_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:22 2005
         (374 letters)



>mm_chr14_84105457_84106230
          Length = 774

 Score =  692 bits (358), Expect = 0.0
 Identities = 370/374 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattatatcatttattcatagcaaatgaagatgtttttatttttcaaagctaacatgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aattatatcatttattcatagcaaatgaagatgtttttatttttcaaagctaacatgtta 490

                                                                       
Query: 61  atgaatattaattcaatattctttaaaattataatcttaaaatttgttgattatggttaa 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 489 atgaatattaattcaatattctttaaaatgataatcttaaaatttgttgattatggttaa 430

                                                                       
Query: 121 agaaaatcttagatgaagttaactaaaacagtaatttaaacatgttcaatttatccatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agaaaatcttagatgaagttaactaaaacagtaatttaaacatgttcaatttatccatgt 370

                                                                       
Query: 181 ataacacgagattcttgaatactgaacaaacagtatatacataccttttcaaatggtagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 369 ataacacgagattcttgaatactgaacaaacagtatatacataccttttcagatggtagc 310

                                                                       
Query: 241 atcttgtaatagttacttttctgttgctttgttgaacaccatattcacgataacttatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atcttgtaatagttacttttctgttgctttgttgaacaccatattcacgataacttatag 250

                                                                       
Query: 301 gagaaagggtttactttggattggggctcctgagtgttaaagtacacaatagtagggcat 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gagaaagggttaactttggattggggctcctgagtgttaaagtacacaatagtagggcat 190

                         
Query: 361 catggtagcatgca 374
           ||||| ||||||||
Sbjct: 189 catggcagcatgca 176


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)