BAC Information

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BAC

Clone NameMSMg01-276H22
Chromosome14 (Build37)
Map Location 48,455,112 - 48,455,400
singlet/doubletsinglet
Overlap genenone
Upstream geneCgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1
Downstream gene4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276H22.T7 (MSMg01no276_h22.b1)MSMg01-276H22.TJ (MSMg01no276_h22.g1)
ACCAG414663AG414664
length767768
length of high quality
(start - end)
336 (46 - 381)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no276_h22.b1 PHD_FILE: MSMg01no276_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:26 2005CHROMAT_FILE: MSMg01no276_h22.g1 PHD_FILE: MSMg01no276_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTTCTTATCTCAGCTATATATAGAATTATATATAGAATACAGTC
CTTACTACTATATTTTTGTATTCTACCTTGTGATTAGTTTCAGTTTTTTT
TTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACATTGTAGCTGTC
TTCAGACACTCCAGAAGAGGGAGTCAGATCTCGATACGGATGGTTGTGAG
CCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTC
GGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTAGTTTCAGTTTTT
TTTTAAATAAAAAAATTATTTTTTTGCCCCCCCCCGCTGGTGCATGCCTT
TAATCCCAGCAGTTGGGAGGCAGAGGCAGGAAAATTTCTGAGTTCGAGGC
CAGCCTGGGGTCTACAGAGTGAGTTTTAGGATAGCCAGGGCTGCGCAGAG
AAACCCTGTCTTGAACCGCTCCCTACACACCAAAAAAAAATTATTCTTTA
CGCCTAACAAAGTTCATTGTTACTCACAGAAATATCGCTAATAAGAGAAA
TGAGAGGCATTGCTAGGTTCTCACTGTCCACTGTTTCTAGTGTTTGCTTT
CTTCAGTCTTCTTGTTCCCAAGCAATTTGAGACAGTCAAGAACCGATCTT
CAACTGACTTCAGTTTTTTTAGGACAAGTTCTTTTTTTACATTTTTNAAA
ACATTTATGTTAGATGT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACACAGCTCTGAGGAGACATTTTG
GACTTTGCAGGCGGGCCCATACATGCTAATTTTTCCATGAAGACCTTTCA
GGAAAAGAGATAGAGTTGCTTGCTTTGAAGTGCTTTGAAATTCAGATTAA
AAGCACAGTAGGGAGACACACACCCCTGCCCCAAGAACACAGGAAAAGTG
AACTCAGGCATGCTGGGGTAAACTGGATCCTGATGAGAAAAAATGAACCT
CTCTTCCCAGAGGCCTCTCCACCCATCCAGACATGCCTGCTTTCAAAGCC
TTGGGCAGAACGGCTGTTTTTGTAACACCCCACCCCCCCGGGATTTCAGT
TTTCCTGGAATTCAGCCATGGGAAAATTCATCTAAATTCCATTTGATACC
TTGACCCATCGGACCCCACCCCTCTCAGGCATCAAGGCTCCCACCCCTCT
CAGGCATCAGGGCTCCCACCCCACTCAAGTATCAGGGTTCCTATCCCTCT
CTGACATCCTGTAACACCGATAGAGCTTCTTTGTCTAATACCACCATACA
TCATTGTGCCAACAAACAGGAATTTTCCACAAGCATTCATTGCTGCATGG
AAGGCTCCAAGGAAGAGGGAAAAAGTCCTGATTCCTGGGCTACAGCCTGT
GGTGGGGTCAGGGGAAGGGTGGTGTTCCAGTCCTAAAACAGATTGGGGGG
CAGGTCCCAGATTTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_h22.g1 MSMg01no276_h22.g1 CHROMAT_FILE:
MSMg01no276_h22.g1 PHD_FILE: MSMg01no276_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:27 2005
         (289 letters)



>mm_chr14_48454912_48455600
          Length = 689

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacagctctgaggagacattttggactttgcaggcgggcccatacatgctaatttttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 acacagctctgaggagacattttggactttgcaggcgggcccatacatgctaatttttcc 430

                                                                       
Query: 61  atgaagacctttcaggaaaagagatagagttgcttgctttgaagtgctttgaaattcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atgaagacctttcaggaaaagagatagagttgcttgctttgaagtgctttgaaattcaga 370

                                                                       
Query: 121 ttaaaagcacagtagggagacacacacccctgccccaagaacacaggaaaagtgaactca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttaaaagcacagtagggagacacacacccctgccccaagaacacaggaaaagtgaactca 310

                                                                       
Query: 181 ggcatgctggggtaaactggatcctgatgagaaaaaatgaacctctcttcccagaggcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggcatgctggggtaaactggatcctgatgagaaaaaatgaacctctcttcccagaggcct 250

                                                            
Query: 241 ctccacccatccagacatgcctgctttcaaagccttgggcagaacggct 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ctccacccatccagacatgcctgctttcaaagccttgggcagaacggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)