BAC Information

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BAC

Clone NameMSMg01-277B16
Chromosome14 (Build37)
Map Location 113,813,062 - 113,813,715
singlet/doubletsinglet
Overlap genenone
Upstream geneEG223186, LOC100043509, Tpm3-rs7
Downstream geneLOC100043510, LOC382947, LOC668791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277B16.T7 (MSMg01no277_b16.b1)MSMg01-277B16.TJ (MSMg01no277_b16.g1)
ACCAG415098AG415099
length977730
length of high quality
(start - end)
---654 (77 - 730)
definitionCHROMAT_FILE: MSMg01no277_b16.b1 PHD_FILE: MSMg01no277_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:10 2005CHROMAT_FILE: MSMg01no277_b16.g1 PHD_FILE: MSMg01no277_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAACGTTGCGGGGCGAGAAATACGAATTTACGTTTCCAGAAAGAGAGATA
TGAGGAAATTATAGTTTTCCCTNAAAGAGGAGGGGTATATGTGGGAGAGG
AGTGTAGGGGATGTTGATGGGAAGAAGAATATTTTTACCCTCAAGAAGGG
GGGGGNNGGGGGGGTGAGGGTGGTGGGAGTGTATACTGGGGGAGTTAGTA
TAAAAGAGATGGTATTTTTGAAGGAGAATAATATAAATATTGTAGTNCTA
GATTCAGTTGGTAATTGAACGTGCACTTATTTATGTTAATAGTGTTAGCA
CAATTCGGTAATATAATGATGGAGGGGTGAATGGTGGGTAGTTGTTGGGG
GGGGCCTGATGTAGGAGTAGGGAGGGATGGAAACGCGTTTTTTTTTATTA
TATGGAGAGAGGGGGAGAGAAGGGGTGGGTGGGGTGGTTTTTTTTTTTTT
TCCCCCCCCCCCCCGCCCGCGGGAAGATAAAATTAGGGGGAGAATAGGTG
TAAGGAGTGCGTCTCTAAGAAAAAAAAAAAAAAAAAATAATTGAGGGGGT
GCGGGAATGAGTATTTTATAGGGTAATAGGCCAAATGTATAGGAAAAGAA
TTATAAAAGTGGAGATAATTAGCCCTTGAGAACATTGAGAAGGTATATAT
TTGTAGTAATTCACAACGAGATTGGTGTACAGTATATATTGAAAAGGCGC
AGAGAATCTATAATATTTAGCGAGGTCTACGAGAGAATAAAATAAGAGGT
ATAGAAAATATAAAGAAAACGGAGTAAAGTGAGCGAAGTATAATTAGCTG
GCGGGGGCGCGTTTGTAAGTTGGGGGGTTTCGCGGTGTAGTAGTTAATAT
GATAGCGCTTCTGTTATCTTTCAACAAATATANAACACACNTGTTGCGAT
TCATGATTCGTGTACCATCATGTTCGAGGTGTTATTTCTCCCTATATTAA
ATTACTAATACTGTGATTATAATATAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCATCCATTTGGAACTTCAATTT
CTAAATGTGTACTAATAATTTTACCCTCTATCTAACCTTATTTTTCTATG
TTTCTTATTTTATTTCTGTTGTAACTTCTGAATTATATGTGTGTACTCAA
TTCATAGTTACTTATTGAAGAACACAAAATTTCTTATATTTTCTGTAAAG
TATCAATTTTTCCCTCTTTGAAGTTTGCTGTTCAATGTTTTATGACAAGA
TTGATTGCTTAACTCCATGACAGCTCCAGAAGGACTTTAATAACACAAAC
TGAAATAATAGTTCTTAAATTCATTTATCCAGTTAATTAAAAATGTAGCC
ACTACTTCATCATATGGATTTATTTCAGTCATTAAGAATTCAAGCCCACT
AAGCATGAATAAAAACGAATTAGGACGTGGATAGTTTGGGAGTCAAGTTG
TTTGGTTTTACTTGCATTTCATTTAAGCATTTCCATGTAGCATACCACTA
GTAAGAGATATTTTACATAATAAATAACTTATAAAGTGATTTTCAAAATA
AATAAGGAGAGATATTGTTTTATATGAAGTCATAAGAAGTGAATTATTTG
ATTTAATGTACTTCATTGATGGAAAAAGATTTATCAGAAAATGTATCAAT
TGAGTGTAAAGACAGGAATAGTTGAACAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_b16.g1 MSMg01no277_b16.g1 CHROMAT_FILE:
MSMg01no277_b16.g1 PHD_FILE: MSMg01no277_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:11 2005
         (654 letters)



>mm_chr14_113812862_113813915
          Length = 1054

 Score = 1257 bits (650), Expect = 0.0
 Identities = 653/654 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatccatttggaacttcaatttctaaatgtgtactaataattttaccctctatctaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatccatttggaacttcaatttctaaatgtgtactaataattttaccctctatctaac 260

                                                                       
Query: 61  cttatttttctatgtttcttattttatttctgttgtaacttctgaattatatgtgtgtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttatttttctatgtttcttattttatttctgttgtaacttctgaattatatgtgtgtac 320

                                                                       
Query: 121 tcaattcatagttacttattgaagaacacaaaatttcttatattttctgtaaagtatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaattcatagttacttattgaagaacacaaaatttcttatattttctgtaaagtatcaa 380

                                                                       
Query: 181 tttttccctctttgaagtttgctgttcaatgttttatgacaagattgattgcttaactcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttccctctttgaagtttgctgttcaatgttttatgacaagattgattgcttaactcc 440

                                                                       
Query: 241 atgacagctccagaaggactttaataacacaaactgaaataatagttcttaaattcattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgacagctccagaaggactttaataacacaaactgaaataatagttcttaaattcattt 500

                                                                       
Query: 301 atccagttaattaaaaatgtagccactacttcatcatatggatttatttcagtcattaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atccagttaattaaaaatgtagccactacttcatcatatggatttatttcagtcattaag 560

                                                                       
Query: 361 aattcaagcccactaagcatgaataaaaacgaattaggacgtggatagtttgggagtcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattcaagcccactaagcatgaataaaaacgaattaggacgtggatagtttgggagtcaa 620

                                                                       
Query: 421 gttgtttggttttacttgcatttcatttaagcatttccatgtagcataccactagtaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttgtttggttttacttgcatttcatttaagcatttccatgtagcataccactagtaaga 680

                                                                       
Query: 481 gatattttacataataaataacttataaagtgattttcaaaataaataaggagagatatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatattttacataataaataacttataaagtgattttcaaaataaataaggagagatatt 740

                                                                       
Query: 541 gttttatatgaagtcataagaagtgaattatttgatttaatgtacttcattgatggaaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 gttttatatgaagtcataagaagtgaattatttgatttaatgtacttcaatgatggaaaa 800

                                                                 
Query: 601 agatttatcagaaaatgtatcaattgagtgtaaagacaggaatagttgaacaga 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agatttatcagaaaatgtatcaattgagtgtaaagacaggaatagttgaacaga 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)