BAC Information

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BAC

Clone NameMSMg01-277C18
Chromosome14 (Build37)
Map Location 82,862,175 - 82,862,484
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277C18.T7 (MSMg01no277_c18.b1)MSMg01-277C18.TJ (MSMg01no277_c18.g1)
ACCAG415147AG415148
length750752
length of high quality
(start - end)
310 (441 - 750)239 (130 - 368)
definitionCHROMAT_FILE: MSMg01no277_c18.b1 PHD_FILE: MSMg01no277_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:15 2005CHROMAT_FILE: MSMg01no277_c18.g1 PHD_FILE: MSMg01no277_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCATATTGTCCGTGGTAATAAAGAATTGTGCAGCTAAGAAAAAC
TACATACAGGCTCTGCACATTTTACCACTATTATATTATATAGCAACCTC
ACAATTTATTTGTAAAAATAATTTACATAAGAAAGTCAAATGACTATGTA
TGTTCTCACACTCATTGAAGCACTGGTAAAAATCATAAAATATAAAAACA
ACCTAAGTGCCCCCAGATACATACATAACCTTATGTGAGTATGTAATAAA
TGCTATTCCATATTAAATGAAATCATATAAGATATAAAAGCATAGATGAA
CTTCAAAGTGATTAAACTAAATGACCCCCCCCCCGTTAGTTAAGCTAATT
ACCAAAGAACACGAATCCACTAGCCATATGAAAAAAAGAGTATGTCTCAT
GCCTCATACATCTCATAAAACAGGCTTAAGTGCTTGTGAGAAGATGGCAG
AGGAGGTGAGGGAGAGTTTTTAAGACAACACATAAAGCTTTATTATAGAA
GATGAGTAAGTTTTTGGTTTGTACACAATTTACTCCTAGTGAAGACTGTA
TTGCACATTTAAGGTTCTGGTAAAATGTGAAAATTCGTATTATTACAACA
ACAATAAACATACAGGCAAAACAACAACAATAACAAATAAACCAAACCCA
GAGAAACAAAGGTCATATTTTAAACTATAGCAGTTGAAAACTCTGTGCAC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAGCACACTTGGCCCTAAGCA
AACATCCTGGTTGCTAGTCTTTCAGCCATTAAGATTCATCCAGCCATAGA
AAGAAAGAAAAAAAACCCACCTCATTCACCCATTACTCTCTTGTGCCTGT
TTCTTATCCCCTCTGCTAGGCTCTGCTTGAATGCTGAGACTGAACCCCAG
CAACTGGCACCTGAACACTTCCCTGTTCTTTGAACCATTTACCTGCATGA
ACAGAATTAGCATTTGGAGAAGCGTTTTTGTTTTTTTTGTGTTTTTTTTT
TGTTTATTTGTTTGTTTTTTTTTTAACCACCCCCGGCGCTTAATCAATTT
GTGAAAATATCAGGATTTATTTGTGCACAGAAAAAAAACTAATTTTCCAT
TGTCATTTATGCACAAACATCTTAAATAATTACTGCCACTCTCTTTCTCA
TTGGGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTTTAAAATGGAACTA
CATTTTAATTCAAGTTAAAACTGTTTTGCCACTAATGTCTGAGTTTCACA
AGTTGCTTCTGATGAGGTATATTTGTCACAGCTGATGAGTCTGTCAAGAA
GAAAGGCTTTCTGTTTGTATAAATGGAAATGCCAAGTGTAATAAAGCAAA
CTACTCTACTGAGAACATGACTCAGTGCTGAAGAGAGCTGGCTGCTTTGC
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_c18.b1 MSMg01no277_c18.b1 CHROMAT_FILE:
MSMg01no277_c18.b1 PHD_FILE: MSMg01no277_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:15 2005
         (310 letters)



>mm_chr14_82861975_82862684
          Length = 710

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgtctcatgcctcatacatctcataaaacaggcttaagtgcttgtgagaagatggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtctcatgcctcatacatctcataaaacaggcttaagtgcttgtgagaagatggcag 260

                                                                       
Query: 61  aggaggtgagggagagtttttaagacaacacataaagctttattatagaagatgagtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaggtgagggagagtttttaagacaacacataaagctttattatagaagatgagtaag 320

                                                                       
Query: 121 tttttggtttgtacacaatttactcctagtgaagactgtattgcacatttaaggttctgg 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttggtttgtacacaatttactcctagtgaagactgtattgcacatttaaggttctgg 380

                                                                       
Query: 181 taaaatgtgaaaattcgtattattacaacaacaataaacatacaggcaaaacaacaacaa 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaatgtgaaagttcgtattattacaacaacaataaacatacaggcaaaacaacaacaa 440

                                                                       
Query: 241 taacaaataaaccaaacccagagaaacaaaggtcatattttaaactatagcagttgaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taacaaataaaccaaacccagagaaacaaaggtcatattttaaactatagcagttgaaaa 500

                     
Query: 301 ctctgtgcac 310
           ||||||||||
Sbjct: 501 ctctgtgcac 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)