BAC Information

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BAC

Clone NameMSMg01-277F16
Chromosome14 (Build37)
Map Location 40,909,330 - 40,909,598
singlet/doubletsinglet
Overlap genenone
Upstream geneNrg3, LOC100040439
Downstream geneLOC218945, LOC100040470, LOC382876, Sh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277F16.T7 (MSMg01no277_f16.b1)MSMg01-277F16.TJ (MSMg01no277_f16.g1)
ACCAG415280AG415281
length760770
length of high quality
(start - end)
72 (39 - 110)277 (77 - 353)
definitionCHROMAT_FILE: MSMg01no277_f16.b1 PHD_FILE: MSMg01no277_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:28 2005CHROMAT_FILE: MSMg01no277_f16.g1 PHD_FILE: MSMg01no277_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
GGTCTTTCCAAGACTTCTATCTTGAATGGGTGTTGGATTTTGTCAAATTC
TTTCTCAGTATTTACCGAGATGATCATATCGTCTTTGTCTTTGAGTTTGT
TTATATAGTGAATTACATTGATGGGTTTCCGTATATTAAGCCATCCCTGC
TTCCCTGGGATGAAGTCTGCTTGGTCATGATGGATGATTGTTTTAATGTG
TTCTGGATTTGGGTTTGAGAGAATTATATTTAGCATTTTTGACTCGACAT
TCGTAATGGAATTATTCTGAAATACTCTTTCTTAGGAGCCGATTTGGGTG
TTTTTTTTTTCCCCCCCCCCCTCCCGTTTGATGGAATTAAATTGGAAGAA
AAACTTCGGTTATTATAAAAAAAGAAAATTTTGTGAACGTTAGGGATTAC
GTAGCCTGATGACAGTGTGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAGCCCAATTGATATTATAAAAATTCAATA
CCAACGGCAAATACACCTTTCCTTTATTTTACCCCAATACCTTCTTGTGG
AACCCATATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATATCTTGGCATTTGAAAATAAT
TATTAATTTCATGCCTACTTGCTCTCTACGTGTTTTACTCTGGAGATAGT
TGTATAATTCCTTCCAATTATTTTAATCCCTTAGGAAACTTGACTACTTT
TACACTATTGTGGATTTATTTGCATCTCACAAAAAATGTCTTCCACTTGT
TTTCTTCTCCTAACCCTAGAAATCTAGAAATCTTTATTTTACTGTTAAAC
ATTCAGATGGTTTCTTTTTTTATGTGTGTGTGTGGGGGTAGGGGGAAGGT
TCACAAATTTTTTTTTTTCACCCCCCTCCCCCACCTGAGTTGTGCTAGTT
TTGTCCCGCTCCGTATTTCCTAAAAAAATTAAACGCCTTTTTGTGGAGCT
TAATCGCTGTCTCTGGAGCATCTTTTGACGAGCAATGCTCTGTTTTTAAT
CACCTTTCCCGCTTCTTATACACATCCCGTCTGTTTTTCGTATGCATTTT
TATGCGGCTTTCTTGCCGCCTGTTTCCTTCATCGCTCATTTATCGTTTCC
CTATTATTAACTTGTTCGTTACCACATATTTCTCATTTTGTTCGCCCCCC
ATTTAATTTCTTTATACCCCTAGAAGTTTTTAGTTTTATAAACCACTTCT
CTTGTCTTAATTCCGCTTATCTCAATTATCAATCTTTACAAATAGCTCAA
TATCTCTATACTTTTGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_f16.g1 MSMg01no277_f16.g1 CHROMAT_FILE:
MSMg01no277_f16.g1 PHD_FILE: MSMg01no277_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:28 2005
         (277 letters)



>mm_chr14_40909145_40909821
          Length = 677

 Score =  480 bits (248), Expect = e-140
 Identities = 266/274 (97%), Gaps = 6/274 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatatcttggcatttgaaaataattattaatttcatgcctacttgctctctacgtgtttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 454 aatatcttggcatttgaaaataattattaatttcatgcctacttgctttctacgtgtttt 395

                                                                       
Query: 61  actctggagatagttgtataattccttccaattattttaatcccttaggaaacttgacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 actctggagatagttgtataattccttccaattattttaatcccttaggaaacttgacta 335

                                                                       
Query: 121 cttttacactattgtggatttatttgcatctcacaaaaaatgtcttccacttgttttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cttttacactattgtggatttatttgcatctcacaaaaaatgtcttccacttgttttctt 275

                                                                       
Query: 181 ctcctaaccctagaaatctagaaatctttattttactgttaaacattcagatggtttctt 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 274 ctcctaaccctagaaatctagaaatcttcattttactgttaaacattcagatggtttctt 215

                                             
Query: 241 tttttatgtgtgtgtgtgggggtagggg-gaagg 273
           ||||||    ||||||||||||| |||| |||||
Sbjct: 214 ttttta----tgtgtgtgggggt-ggggagaagg 186


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)