BAC Information

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BAC

Clone NameMSMg01-277M12
Chromosome14 (Build37)
Map Location 103,505,428 - 103,505,716
singlet/doubletsinglet
Overlap geneLOC100043441
Upstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3
Downstream genePhr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277M12.T7 (MSMg01no277_m12.b1)MSMg01-277M12.TJ (MSMg01no277_m12.g1)
ACCAG415586AG415587
length728812
length of high quality
(start - end)
292 (73 - 364)39 (76 - 114)
definitionCHROMAT_FILE: MSMg01no277_m12.b1 PHD_FILE: MSMg01no277_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:59 2005CHROMAT_FILE: MSMg01no277_m12.g1 PHD_FILE: MSMg01no277_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCCCTTCCCGAAACACCCATAAAAACAGGAGATTATAGTGAGGC
TGCTGTAAATATTTAATTTACCCCCTCTGGAACTGAAACTAACCTGAAGG
ATACACACAGGTAAGAGGCTTCCTTCACACCTGAGACATAGAAGAAAAAC
GCTGGGATCCATTGACTTTGCTGGCTGACAGCTCAACTACGGCTTTTCTC
TTTTTCTCTTTTTTTTTTTAATTAGGTATTTTCCTCATTTACATTTTCAA
TGCTATCTCAAAAGTCCCCCATGCCCTCCCCCCACCCCCCTACCCACCCA
CTCCCACTTTTTTTTTCTGCCCCCCCCCCGCACTGGGGCATATAAAGTTT
GAAAGTCCAATGGGCTTCTCTTAAAAAAAAAGAACGACTAGGCCATCTTT
TGATACATATGCAACTAGAGTCAAGAGCTCCGGGGTACTGGCTAGTTCAT
AATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACT
TTCTCTAGCTCCTCCATTGGGGACCCTGTGATCCATCCTATAGCTGACTG
TGAGCAACCACTTCTGTGTTTGCTAGGTCCGGCATAGTCTCTCTAGAGAC
AGATATATCAGGGTCCTATCCAGTACCATCTTGCTATTGTACGCAATGGA
GTCAGCGTTTGGAGTCTGGTTAAGCCAT
CCATGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGTCAGAGAGAGATGGGGAGGAAG
AGAGAGAGAGAGAGTTTTTCACCCCACAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGATTGAGAGAGTGAGTGAGTGTATTNNTTNTTTTTTAT
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTGTT
TATTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTGTTTTTTTTATTTT
TTGGTGGAGAGAAAGGTTGGTTTTTTTTTTTTTTAGAGAAAGGGAGAGGG
GGAGAAAAGGGATTTTGGGGTGGCCTCCGAGAACCGAGACCCCGTGTGGT
TTTTTTTATTGTTTTTTTTTTTGTTGTTTTTTTTTAAATTTGATTTAATA
TTTTTTTTTTGGGTGGTTGTTTGTTTTTTTATTTTTTTTTATTTTTTTTT
GTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTGTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTGT
TTTCGTTTTTATCTCTATTTTCCTCCTTCTTCTTTTCTCTTTTCTCCTTT
TCTTTCCTCCTTCTTCCCCCTCTTTCTTTTCGCTTTTTCCTTTTTCTCTC
TTCCCCCCCTTTTCCTTTTCCCCTTCCTCCCCTTCCTCTTTTCCTCCCCT
CTTCCCTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_m12.b1 MSMg01no277_m12.b1 CHROMAT_FILE:
MSMg01no277_m12.b1 PHD_FILE: MSMg01no277_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:59 2005
         (292 letters)



>mm_chr14_103505338_103506029
          Length = 692

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%), Gaps = 1/290 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccataaaaacaggagattatagtgaggctgctgtaaatatttaatttaccccctctggaa 60
           |||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct: 379 ccataaaaacaggagattatagtgaggctgctgtaaatatttaactaaccacctctggaa 320

                                                                       
Query: 61  ctgaaactaacctgaaggatacacacaggtaagaggcttccttcacacctgagacataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctgaaactaacctgaaggatacacacaggtaagaggcttccttcacacctgagacataga 260

                                                                       
Query: 121 agaaaaacgctgggatccattgactttgctggctgacagctcaactacggcttttctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agaaaaacgctgggatccattgactttgctggctgacagctcaactacggcttttctctt 200

                                                                       
Query: 181 tttctctttttttttttaattaggtattttcctcatttacattttcaatgctatctcaaa 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tttctc-ttttttttttaattaggtattttcctcatttacattttcaatgctatctcaaa 141

                                                             
Query: 241 agtcccccatgccctccccccacccccctacccacccactcccacttttt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 agtcccccatgccctccccccacccccctacccacccactcccacttttt 91


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)