BAC Information

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BAC

Clone NameMSMg01-278A22
Chromosome14 (Build37)
Map Location 27,047,358 - 27,047,620
singlet/doubletsinglet
Overlap geneLOC100039280
Upstream geneZmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257
Downstream geneLOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278A22.T7 (MSMg01no278_a22.b1)MSMg01-278A22.TJ (MSMg01no278_a22.g1)
ACCAG415786AG415787
length715713
length of high quality
(start - end)
---277 (77 - 353)
definitionCHROMAT_FILE: MSMg01no278_a22.b1 PHD_FILE: MSMg01no278_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:17 2005CHROMAT_FILE: MSMg01no278_a22.g1 PHD_FILE: MSMg01no278_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:17 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATCCGC
GGAATTCTCTCATTCCCTTTTATAGACGAGCTGAATATTAGACGTTCTCA
CGTCGAATTCTCAGCAGCTTCTGTCCCCGAAACAGTAGATTACCTGGGTA
TCAAGGGGACCCATAGCTCCTCACAAAGCGACAAATGTGACTTCAGCCAT
TTAGCTTATAGTAAAACAAAAGCTTTTTCTCGTGAGAAGACAATCCTGGA
GGCCAATCCTCAAGCATACGGTTGACCTAGCAGACCATCTTGATTCTCTG
CTGAGAAAGTATGCTTTCTCAGTGTCCTTTTGAGCTGGGATATCCTTAAC
CCATCTCGAAGTTATTTTTTTTCCTCCCCCACCTCTCTATCGTCTGTGAG
GAAGTTTTTCTTAGATATATCATGTGACTTGAAATGATGTAATTCTAACA
TGGATCTTTGAGGTATGAAGCTAAAATCTTCTTCTAAGCCTTTATAGATG
GGAAGACCTACCCGTAATCTGGGGCACACCTTTTGCTGTCAACACTTGCA
GACGACTCGAAGGAAGGGAGCTCTCTTTTGCCTGCTGGCCCCTGACTATC
CTAGTTAGACCACTTCTTTACTAGTATTATAGCCACTTCTTCACGATTCT
TACTTATAGGCATATACTGAGGACCAGCTAAGACAGCTGCCTGACCAGTA
GATTCTATCATATTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTAGACAAGCAAGCCTTTCTT
CTCCTCTTGCTTCTTCCAGAACAGCTGGGACTGTAGGGCAGCACCCCCAG
CCCTGGCTGTCTCTGTTCTTTGTTATTCAGTTAATGTGCAGTTGTTCTTG
AATGCCTTGAACAGTCTCAGTCTTGGCTAATTGATTATTCTGTTCCTGGG
CTCCTCCAGATTTTATACAGATTTGTATTGCCAGAGATTGACCTGGTCAG
CTTTGGGCTTGTACATGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAA
GGACTTAATTTATTTTTTCCCCCCGCCCCCCCCCTGGGCCTTTTATCCCA
GCTTTGGTAGCATAGGCAGGTAGGAAACAAAGAATTCAAGCCTAGGCTAG
GCCAGGATATCCAAGACTACTCAGATAAACCCTGTCCACAAAGAAAGACA
AATTTATTGACTATGTATGAATGCTTTGACTGCATGGGGGCTTGTGCACC
ACATGCATGCCTATGGATGGTTGTGAGCTACCACTTGAACACTGGAAAAT
TGGTAAAGCTGACCAATGCATCTCCACAACTGTCTGAATAAGCGAACTTT
ATTTATACTGGCCAGTTGCCTGCCTCTCCCCAGGTTCAGAGAATCACACT
TCACTGACTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_a22.g1 MSMg01no278_a22.g1 CHROMAT_FILE:
MSMg01no278_a22.g1 PHD_FILE: MSMg01no278_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:17 2005
         (277 letters)



>mm_chr14_27047158_27047834
          Length = 677

 Score =  470 bits (243), Expect = e-137
 Identities = 259/265 (97%), Gaps = 2/265 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtagacaagcaagcctttcttctcctcttgcttcttccagaacagctgggactgtag 60
           ||||||| |||||||||||| |||||||||||||||||||  ||||||||||||||||||
Sbjct: 201 tctgtagccaagcaagccttgcttctcctcttgcttcttctggaacagctgggactgtag 260

                                                                       
Query: 61  ggcagcacccccagccctggctgtctctgttctttgttattcagttaatgtgcagttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcagcacccccagccctggctgtctctgttctttgttattcagttaatgtgcagttgtt 320

                                                                       
Query: 121 cttgaatgccttgaacagtctcagtcttggctaattgattattctgttcctgggctcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgaatgccttgaacagtctcagtcttggctaattgattattctgttcctgggctcctc 380

                                                                       
Query: 181 cagattttatacagatttgtattgccagagattgacctggtcagctttgggcttgtacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagattttatacagatttgtattgccagagattgacctggtcagctttgggcttgtacat 440

                                    
Query: 241 ggctttttttttttttttttttttt 265
           |  ||||||||||||||||||||||
Sbjct: 441 g--tttttttttttttttttttttt 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)