BAC Information

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BAC

Clone NameMSMg01-278I18
Chromosome14 (Build37)
Map Location 38,462,333 - 38,462,612
singlet/doubletsinglet
Overlap genenone
Upstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
Downstream geneLOC382871, LOC382872, Nrg3, LOC100041521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278I18.T7 (MSMg01no278_i18.b1)MSMg01-278I18.TJ (MSMg01no278_i18.g1)
ACCAG416145AG416146
length693771
length of high quality
(start - end)
43 (53 - 95)280 (136 - 415)
definitionCHROMAT_FILE: MSMg01no278_i18.b1 PHD_FILE: MSMg01no278_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:54 2005CHROMAT_FILE: MSMg01no278_i18.g1 PHD_FILE: MSMg01no278_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAACTCACTTCGAAAAGAGGATCCGCGGAATTCTCTTTACCACACAAAAG
TACACACACACACACCACCACCACCACCACCACCACCATCATTTTCACAC
ATTTAAAATTTTAAGAGAAGTATAATTCTATTGTTATAAAGGGAAAAATA
TAGAGTACAGAGAAATGAAGTCAGGTGTGATGCTGCACACATGTTACCCT
GCATTCTAGAGAGAGAAGTGTTATGCTTGAATGTAGTCTGAGCTATATCT
TCAGTTCCAGGGCAGCCTGGAGTATTGGTGAGACTTTGTTTTTTTTTCCT
AACAGAAAACAGAGAAGTAGATATCAAGACTATTTTTCTTATCCACCTCC
TCCCCACCATGGAAATTAGATAGAAAAGTTGAACTTTACACACAAATGTA
AAGAAACAAAAAGAGCTCTAGTCTGTCTGAGGGACATAGGCAATGTTGAA
GCTTCTATTAGGTGAAAAGAATTGATTAGTTTTGCAACTTGTGTGACTTT
ATGAGCTCTGTTTGTCCAGTGGTGGCAAGAGTACAGTCAGCTTGAAAAAC
ATACTTGGACATTCAGTTTGCAGGTTTTAAACATATAACACACTGCCTGG
TATCACTGGCGGTGTGATACGCTTTCTGTAACAAGGATACATGACCAGTG
TGTCCATGCTTCCTCCCCATAAATAGAGATTAATTTGAAAGAC
NTTTTTTTTTTACCCCNNNTTNNTTTTTTTTTTTTGTCCCGCCAAATTTT
NNNNNCCTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAATCATTCTTAGA
TACATAGGAAGCCATGACAAATGTGAGGCCCACAATTAACTTTCTCAAAG
AAATCCAGTGACATAAATAAAATATGACAGTATGGCACTCTTAACTATAG
TGCTGCCAGCTGTGTCACAGCATAGAGTCTCAACAATAGTGTAATAATGA
ACGATGACTGTATTTCTTGTTATTATGTCTTGCTCCTGTACTACACAGTG
CAGGCTTGATTGTCATTTCTAGTATACTACTCCAGAATTCAATGCCAAAA
TATTTTTCTGAATTGNGTATTTTGCCCCGAACTACCGACTTCACCCTAAA
CATAAAAGCATAAATAATTGAAACTTAAATATAATAACAACAACATAACT
TGAATGTTTAAAAAAATAAAGAGGAAAAAATGAAGAAGAAAGAGATGCTA
AAAGATAGCTGAAAAGGAATTTCAGCTCCAGGAACATGATCAGAAGATGA
AGTCTGAACAGAAGTAAGGAAATGATGGTATTCTAGAAATAGAGTTTTAA
AGTCTCATGAAGACCAGCCACGCACAATAAGGAACATACCATCCTCTTAG
AGACAAGGACCTGCATATGACTGTAAATGAATGGGGATGGAATAATATGC
CCAAAGTTTGGAACTCAGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_i18.g1 MSMg01no278_i18.g1 CHROMAT_FILE:
MSMg01no278_i18.g1 PHD_FILE: MSMg01no278_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:55 2005
         (280 letters)



>mm_chr14_38462133_38462812
          Length = 680

 Score =  495 bits (256), Expect = e-144
 Identities = 274/280 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatcattcttagatacataggaagccatgacaaatgtgaggcccacaattaactttct 60
           |||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||
Sbjct: 201 aaaatcattcttagatacataggaagccatgacaaatgtgaggtacacaattaattttct 260

                                                                       
Query: 61  caaagaaatccagtgacataaataaaatatgacagtatggcactcttaactatagtgctg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaagaaatccagtgatataaataaaatatgacagtatggcactcttaactatagtgctg 320

                                                                       
Query: 121 ccagctgtgtcacagcatagagtctcaacaatagtgtaataatgaacgatgactgtattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 321 ccagctgtgtcacagcatagagtctcaacaatagtgtaataatgaacaatgattgtattt 380

                                                                       
Query: 181 cttgttattatgtcttgctcctgtactacacagtgcaggcttgattgtcatttctagtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgttattatgtcttgctcctgtactacacagtgcaggcttgattgtcatttctagtat 440

                                                   
Query: 241 actactccagaattcaatgccaaaatatttttctgaattg 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actactccagaattcaatgccaaaatatttttctgaattg 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)