BAC Information

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BAC

Clone NameMSMg01-278P08
Chromosome14 (Build37)
Map Location 18,548,409 - 18,548,684
singlet/doubletsinglet
Overlap genenone
Upstream geneTpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278P08.T7 (MSMg01no278_p08.b1)MSMg01-278P08.TJ (MSMg01no278_p08.g1)
ACCAG416453AG416454
length682705
length of high quality
(start - end)
312 (5 - 316)276 (58 - 333)
definitionCHROMAT_FILE: MSMg01no278_p08.b1 PHD_FILE: MSMg01no278_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:26 2005CHROMAT_FILE: MSMg01no278_p08.g1 PHD_FILE: MSMg01no278_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGATCCGCGGAATTCATCAGTGAATTTTAGAATGGCAGTTTTGATATG
ATGGCCCTTTAAGAGGCAGACTCACAGATGTGAGGGCAATCTGGCTGTGA
CATCTGTCACCCCATTGATCACCAGGGTTGATTCGGCTGATCTGGCTGGC
TGGGCGGGTGTCCCCTTCTTCCCTCACCGCTCCATGTGCGTCCCTCCCAA
AGCTGCTCGGTCGAAGAGGACGACCTTCCCTGAGTCTCTGTTCAGGGAAG
GACCGGTTTTCGGTCAAGGCTGTACGATTATTTGTGCTCCCCTGCAAGAA
CCTCCAAACAAGCTCTCTTTATCTATACTCCNTGCGGCCACACTGCTCTT
GAAAGGATTAGTATAGCTTTTATGGGACCCCTGAAAAATAATAAGAATTG
TTACGACAGTGAGAATGACTGAGGGATTGCAGTGTGGTTTCCTGTCTCCA
GACAAAATCTCTTTCTTTAATTGCATGCCCACTGTAATGATGTCCTCTTG
ATAGTTCCAAGAAAGAGTTGGAATACACCTAATCTTATACTTGAACCTCC
CAAACTTGAGTTAAAACTTCTTTTCCTTATACAGTTTCCTTATAAAGGTT
CACATTTTTGTTGCTGTTGCCGTTGTAACTATACCAAACTATTCATGAAT
GGACGTTATATTGTGTTTTTTATATCACTTAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTAGTGATTCTTGAAAAGTATATAAAGGTTAGAACCCTGAGAGG
CCATATGGAGGCTGCTGTTTCCCTGATACTACCAGCTGCCAGCTGCTGGC
TGCTGGCTACTGGCTTCTGGCTGCTGGTTGCTTGTTGGAGATACCCTGAT
GAGGAAGATCAAACTTGTCCCAAGGAACTCAATGCTACCAACTAACAGGA
AGTAGTCTAATGATATTGCCACCTCCTTTCCCTTCTTTCCTTCTTTCTCT
CCTACCTGGTGTTGGGGTTTGAAAGGGATAAGGTTGTTTTTTTTGCGCCA
GCTCGCCCCCTCTCTAGTCTTGGGTTACAACTGATTTCTACTTGTGTGAA
AGGAAATAGAATTATACCATGGCTTGAATCATTGACTCCCCCAACAGCTT
GTACAAGCTGGGAGCTGGAAGCTAGTGCCACTACAGCATATGTGCATACA
GTTGTACACTTCTGCTCTTTCTTGGCCCCATGACTCTGTCTCCTATTTCC
TACTCTTTCAGTTCTTTGGGGATTGATCTTGCTTCTTGTGCCCTGAAAGT
GTGGACTTAACTGACTTCCAACTGCTGTTCTCTTGCTATCACCACACATT
ATTTGTTATTCCTTTTGCCTCCCTGTACTATATATCCCTCCCCATAGAGT
CCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_p08.g1 MSMg01no278_p08.g1 CHROMAT_FILE:
MSMg01no278_p08.g1 PHD_FILE: MSMg01no278_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:26 2005
         (276 letters)



>mm_chr14_18548209_18548884
          Length = 676

 Score =  511 bits (264), Expect = e-149
 Identities = 273/276 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtgattcttgaaaagtatataaaggttagaaccctgagaggccatatggaggctgctg 60
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 201 tagtgattcttgaaaagtatataaaggttagaaccctgagaggggatatggaggctgctg 260

                                                                       
Query: 61  tttccctgatactaccagctgccagctgctggctgctggctactggcttctggctgctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttccctgatactaccagctgccagctgctggctgctggctactggcttctggctgctgg 320

                                                                       
Query: 121 ttgcttgttggagataccctgatgaggaagatcaaacttgtcccaaggaactcaatgcta 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 ttgcttgttggagataccctgatgaggaagatcaaacttgccccaaggaactcaatgcta 380

                                                                       
Query: 181 ccaactaacaggaagtagtctaatgatattgccacctcctttcccttctttccttctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaactaacaggaagtagtctaatgatattgccacctcctttcccttctttccttctttc 440

                                               
Query: 241 tctcctacctggtgttggggtttgaaagggataagg 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcctacctggtgttggggtttgaaagggataagg 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)