BAC Information

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BAC

Clone NameMSMg01-280J14
Chromosome14 (Build37)
Map Location 49,261,670 - 49,433,925
singlet/doubletdoublet
Overlap geneOtx2, LOC100041864
Upstream geneKtn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik
Downstream geneLOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280J14.T7 (MSMg01no280_j14.b1)MSMg01-280J14.TJ (MSMg01no280_j14.g1)
ACCAG417650AG417651
length771778
length of high quality
(start - end)
201 (166 - 366)194 (135 - 328)
definitionCHROMAT_FILE: MSMg01no280_j14.b1 PHD_FILE: MSMg01no280_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:28 2005CHROMAT_FILE: MSMg01no280_j14.g1 PHD_FILE: MSMg01no280_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,433,726 - 49,433,925)(49,261,670 - 49,261,860)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCGGTGAGTCAGATGAGACTAAAGTTAGTTTACAACACAGTCGGGCT
TAAGGGAAGTACATTTCATATAGCCCGTTACCAGTTCATCATGTTTAAGA
AGATGTCCCTTATGGAAAATTTTCCACCAACAAGAAATGATTAGAAGCAA
GCAAATGATAGCCACCAACATTTCATCTCTGAATGCAATTATGATGCAAC
TTAGAAATGCTATTATACTGATGCCCTATAATTAAGTAAGCAATTAAAAA
CAAAAAACAGTTCATTAACAAATTGTCATAACTATACCGACAAGTGCCCA
TGAGGTCACGGTCATTTAAGTGCTTGCCCCCACCACCTATGTTTTCCCAA
GAGCACAAATCCTAACCAACAGGCTTATTTCCAACATAAATCCGTGTTAT
ATAAGTAGCAACTTGGAGGAGAAAAAACGAAATAGACATTGCACCCAAAT
GTGAGGAGAGGAGAGCTCTGTGACACATGTGCCGTTTGTTAGCGTGTGAT
GAGATGTCACGATCTAATATCAGTGTTGTTTAAAACTGAAAATAGGGACT
CTGAGGTACAGCGCTTGAGTAACGTGAGTTTGGTTTCCAGCACTGAAAAC
TAAGAGAATAGAGAAGATTCCTTAGCTATTTAATGTAGGCACAAGTAGAA
TGCTCTCAACAGTCTCGTTCCTTTTTGCTGGCTTGATCGCATCTAATGAA
GGTGGTGAATGCATGTTAAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCCCGAAAAAAAAAACACTTGTAATTAAGCATTAAG
TGGTTTCTTAATGGACTGTTTTTTCCCAAAGGACCTTTCTTTAATTTACA
ATCAGTATGTCTGTCCAAAACATTAATTGTTTTTGCCTATTTCAGTTACA
ATTCCTATAACAACTCCAGCTTTTTTTTTCCTCTTTCTCCCTCTCCCTGA
GATGTTTGGAATTGGTGTGGAAGGGGGTAGTTTCAAAGACATTCGAACCA
AAGCCAAGTTTGTTGGCAGCAACCTTTTTATTTCAGGGCCAGGACACATG
ACACCATATGGAATTTTACTGCCTTCAGAAACAAGACCCATGTATGTGNT
CACTGGGAGACCTCTCCAAGCCCAGAAAAACNGTACTTCTTAAATGGTGC
TTGTGTGCATCAGCATGTCCTGTTCAAATGTGCTCTGAAAAAGAGTTGGA
AGGGGGAGGGGGAGGGAGAGGTTAATTTTTTTTTATTAATAAGAGTATTT
TTAATATTATAATTATTAAATATTAAATAAAACATATAATGTTATAGGAA
TTTGTTGGTTGTATAATAATCTATATTTTTAATCTAATATCATATATATT
ATATTAAGAAAAACATATTAATATTATTTTTCCTTAGTGCGTTATTTTCT
GTAACTTATTCATACAAATATAACAAACATTAAAACTTAATTTTATTTAT
TTTATCAACATACTTTTTTATTCAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_j14.b1 MSMg01no280_j14.b1 CHROMAT_FILE:
MSMg01no280_j14.b1 PHD_FILE: MSMg01no280_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:28 2005
         (201 letters)



>mm_chr14_49433526_49434126
          Length = 601

 Score =  387 bits (200), Expect = e-112
 Identities = 200/200 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaattttccaccaacaagaaatgattagaagcaagcaaatgatagccaccaacatttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aaaattttccaccaacaagaaatgattagaagcaagcaaatgatagccaccaacatttca 341

                                                                       
Query: 61  tctctgaatgcaattatgatgcaacttagaaatgctattatactgatgccctataattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tctctgaatgcaattatgatgcaacttagaaatgctattatactgatgccctataattaa 281

                                                                       
Query: 121 gtaagcaattaaaaacaaaaaacagttcattaacaaattgtcataactataccgacaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gtaagcaattaaaaacaaaaaacagttcattaacaaattgtcataactataccgacaagt 221

                               
Query: 181 gcccatgaggtcacggtcat 200
           ||||||||||||||||||||
Sbjct: 220 gcccatgaggtcacggtcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no280_j14.g1 MSMg01no280_j14.g1 CHROMAT_FILE:
MSMg01no280_j14.g1 PHD_FILE: MSMg01no280_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:29 2005
         (194 letters)



>mm_chr14_49261470_49262063
          Length = 594

 Score =  369 bits (191), Expect = e-107
 Identities = 191/191 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttctttaatttacaatcagtatgtctgtccaaaacattaattgtttttgcctatttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttctttaatttacaatcagtatgtctgtccaaaacattaattgtttttgcctatttca 260

                                                                       
Query: 61  gttacaattcctataacaactccagctttttttttcctctttctccctctccctgagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttacaattcctataacaactccagctttttttttcctctttctccctctccctgagatg 320

                                                                       
Query: 121 tttggaattggtgtggaagggggtagtttcaaagacattcgaaccaaagccaagtttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttggaattggtgtggaagggggtagtttcaaagacattcgaaccaaagccaagtttgtt 380

                      
Query: 181 ggcagcaacct 191
           |||||||||||
Sbjct: 381 ggcagcaacct 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)