Query= MSMg01no280_o09.b1 MSMg01no280_o09.b1 CHROMAT_FILE:
MSMg01no280_o09.b1 PHD_FILE: MSMg01no280_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:51 2005
(651 letters)
>mm_chr14_25972605_25973652
Length = 1048
Score = 996 bits (515), Expect = 0.0
Identities = 612/665 (92%), Gaps = 41/665 (6%)
Strand = Plus / Plus
Query: 23 tcctaactcaaacagaagaaatgtctgaaaagatagctgagattgttttctgggctccac 82
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 189 tcctaactcaaacagaagaaatatctgaaaagatagctgagattgttttctgggatccac 248
Query: 83 agacatttaaatacatgtgcgtgcacacacacatacacacacaca------------cac 130
||||||||||||||||||| |||||| |||||| ||||||||||| ||
Sbjct: 249 agacatttaaatacatgtgagtgcacgcacacacacacacacacagagagagagagacag 308
Query: 131 aca--cagagagagaga------gaga--gagagagagacagagagaca--------gag 172
||| |||| ||| ||| |||| |||||||||||||||||| | |||
Sbjct: 309 acagacagacagacagacagacagagacagagagagagacagagagagatagggagagag 368
Query: 173 agacagagacagaga----cagagacagagacagaggggggaggg--gggaagatatgga 226
||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 369 agacagagagagagagagacagagacagagacagaggggggagggaggggaagatatgga 428
Query: 227 tctgctacccatggtcaatgcagcgtgaatcaatgatagtagaatcacttttgttctcct 286
||||||||||||||||||||||||||||||| |||||||||| | |||| ||||||||
Sbjct: 429 tctgctacccatggtcaatgcagcgtgaatcgatgatagtag---c-cttt-gttctcct 483
Query: 287 tcctctgaggttctttggactccagaaagggaagagaaacctcctaggggttcagatgca 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tcctctgaggttctttggactccagaaagggaagagaaacctcctaggggttcagatgca 543
Query: 347 ttcaagacctctggccactgggcagaaaggctccttggctgtcaatggtgaggcaaagac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttcaagacctctggccactgggcagaaaggctccttggctgtcaatggtgaggcaaagac 603
Query: 407 attgtgaatctgattggcctgtatctccatcttgtgtgcctggctgctggcccagtgacc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 attgtgaatctgattggcctgtatctccatcttgtgtgcctggctgctggcccagtgacc 663
Query: 467 agctgagagagagcaggctcctgacaaagtccaagagatgaacgaagacgagcaagtctc 526
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 agctgagagagagcaggttcctgacaaagtccaagagatgaacgaagacgagcaagtctc 723
Query: 527 cagatttgaggatgacacacgaccacatatagaggccagtgactgggatggacctgagct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 cagatttgaggatgacacacgaccacatatagaggccagtgactgggatggacctgagct 783
Query: 587 gctctctaccaaaaccccaggtgttctctgggaagttacactgcagcttatcctggcaac 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gctctctaccaaaaccccaggtgttctctgggaagttacactgcagcttatcctggcaac 843
Query: 647 tgggg 651
|||||
Sbjct: 844 tgggg 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1048
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1038
Effective search space: 665358
Effective search space used: 665358
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_o09.g1 MSMg01no280_o09.g1 CHROMAT_FILE:
MSMg01no280_o09.g1 PHD_FILE: MSMg01no280_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:51 2005
(280 letters)
>mm_chr14_26122154_26122836
Length = 683
Score = 393 bits (203), Expect = e-114
Identities = 266/305 (87%), Gaps = 33/305 (10%)
Strand = Plus / Minus
Query: 1 cacatggcctgttaggctatcaattcttttga-gaaaagaagttgataaccggcctgt-g 58
|||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||| | |
Sbjct: 351 cacatgccctgttaggctatcaattcttttgaggaaaa-aagttgataaatggcct-tcg 294
Query: 59 gtgaccctcaaactcttgtgttccaagggacgatgaaacgcacaatctaacctg---ttc 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 293 gtgaccctcaaactcttgtgttccaagggacgatgaaacgcacaatctaacctgttcttc 234
Query: 116 tgggccacctttgatgagcagaagatcttggaactctctctctctctctc---------- 165
|| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tgagccacctttgatgagcagaagatcttggaactctctctctctctctctctctctctc 174
Query: 166 ----------------tctctctctctctctctctctctctctcattttctctctctctc 209
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tctctctctcactcattctctctctctctctctctctctctctcattttctctctctctc 114
Query: 210 taggcttaatttgccctcctttaaagtaaggccaagacttttttttttttttttaacttc 269
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 113 taggcttaatttgccctcctttaaagtaaggctaagactcttttttttttttttaacttc 54
Query: 270 caaaa 274
|||||
Sbjct: 53 caaaa 49
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 683
Length adjustment: 9
Effective length of query: 271
Effective length of database: 674
Effective search space: 182654
Effective search space used: 182654
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
