BAC Information

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BAC

Clone NameMSMg01-288N18
Chromosome14 (Build37)
Map Location 32,130,934 - 32,304,421
singlet/doubletdoublet
Overlap geneDnahc1, Capn7, Sh3bp5, Mettl6
Upstream geneCacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1
Downstream geneEaf1, Colq, Hacl1, Btd, Ankrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288N18.T7 (MSMg01no288_n18.b1)MSMg01-288N18.TJ (MSMg01no288_n18.g1)
ACCAG418569AG418570
length760758
length of high quality
(start - end)		320 (48 - 367)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no288_n18.b1 PHD_FILE: MSMg01no288_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:02 2005CHROMAT_FILE: MSMg01no288_n18.g1 PHD_FILE: MSMg01no288_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,304,106 - 32,304,421)(32,130,934 - 32,131,223)
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTACGCCTGGCACTTAGATAATCATTTATTGTTTCCATTGCC
CTGTTTTTAGTGATCTATTTATTTTTATTTTATGTACATTTATGTTCTGC
CTGCTTGTGTGTGTGTGAGAGGGCCCAATCCCCTAGAACTGCAGTTAGAG
TTGTGAGCTCTCATGTGGGTGCTGGGGATTGGACTCAGATCTTTGGAAAA
GCAGACGGTGCTCGTAACCACCGAGCCAACTCTTTTGCATTTGCATCTGT
ACCATTTTAGTTTTCTTTTAGAGTTTAGAGATTTATCTATTTTGGGTTTA
TGAGACAGGGTTTCTCTGTTTATTCCTGCCCCCCCCCGCAACTCACTCTG
TAGATCAGGCTGGTCTCGAACTCACAAATCCACCTGACTTTGCCTCCCGA
GTGCTGGGATTAAAGGCGTGCGCCACCACCGCCCAGCTATTTTTCTATTT
TTAATTATGTATAGTGTGTATGTGCCTGCATGTGCGTATAAACACAGCAC
ACCTGCAGAGGTCAGAAGTTGCAGATCCCCGGTAGCTGGAGTTATCGGCA
GCTGCCTGATATGGTTAGTGGAAGTCGGGTCCTCTGAGAAAGCAGCCTTT
ACTGCTGAGCCATCTCTCCAGCCCCTAGTGTTCTTTTTAAAAAACATTGT
TTGTCTGTTTTTATATTGTGCGTGAATATACATGTATGTGGGTATGCACG
TGTCGCTCCT

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGGGCTACTGCTCTCCCCTACG
TCCTGGTACCCCACTTCCTCTCTGGAGTAAAAAAAATAGTTCTACTGCAT
GAACTAACTTTGGGGGTGTCCTTTGGAATCCCACAGAAGCCCAGGCTAGT
ATCTGAGGTTTTGTAGAGGCCTTGGGTAACTGAATAGACAGCTATCAGTG
CCTTCCAAGGCCTCTGACAGGCACCACCCTGGGGCCCGCCCGTTTGGATG
TTCCTCCTTCTGTGGGTAGGGGGCTGATCCACTGGCCTTAGCCATGGCCC
ACTGATATGAATGGTATGATCATCTGCCACCTCCTCCACAGGCTGAGACC
TGTGGCTTGTCACCTGAATCCTACAAGATTGTGAAATTGTGGGGAAAAAG
CTAGACCCTTTGACAAGCACACAAATATCCATGGCCGTGATGCTTTTCTG
TACCATTTTAAGGGTTCATAGACTCAGGGGCTGACAGGAATGTTTTGAAG
AGTGTTAGGAAAGGGCCAGGCCTTTCCTCAGGTGGACATGGGACAGATGC
CTGGGACTGTGGGGCATCTGGACCTGAGGGACGGGTGTACTGTCTGTTGG
AGGAGGGAACCAATAAGGCTAGGTTCCTTCTATATCCTGGACTCCACCAA
GGTCGTCTTCTCTGCCTCAGGCCTGCCCCAGGCATGTTCTGAGACGTCCA
TGAACGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_n18.b1 MSMg01no288_n18.b1 CHROMAT_FILE:
MSMg01no288_n18.b1 PHD_FILE: MSMg01no288_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:02 2005
         (320 letters)



>mm_chr14_32304102_32304821
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttacgcctggcacttagataatcatttattgtttccattgccctgtttttagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaattctttacgcctggcacttagataatcatttattgtttccattgccctgtttttagt 261

                                                                       
Query: 65  gatctatttatttttattttatgtacatttatgttctgcctgcttgtgtgtgtgtgagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gatctatttatttttattttatgtacatttatgttctgcctgcttgtgtgtgtgtgagag 201

                                                                       
Query: 125 ggcccaatcccctagaactgcagttagagttgtgagctctcatgtgggtgctggggattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggcccaatcccctagaactgcagttagagttgtgagctctcatgtgggtgctggggattg 141

                                                                       
Query: 185 gactcagatctttggaaaagcagacggtgctcgtaaccaccgagccaactcttttgcatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 gactcagatctttggaaaagcagacggtgctcgtaaccaccgagccaactcttttgcatt 81

                                                                       
Query: 245 tgcatctgtaccattttagttttcttttagagtttagagatttatctattttgggtttat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  tgcatctgtaccattttagttttcttttagagtttagagatttatctattttgggtttat 21

                           
Query: 305 gagacagggtttctct 320
           ||||||||||||||||
Sbjct: 20  gagacagggtttctct 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no288_n18.g1 MSMg01no288_n18.g1 CHROMAT_FILE:
MSMg01no288_n18.g1 PHD_FILE: MSMg01no288_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:03 2005
         (291 letters)



>mm_chr14_32130734_32131424
          Length = 691

 Score =  499 bits (258), Expect = e-146
 Identities = 282/290 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgggctactgctctcccctacgtcctggtaccccacttcctctctggagtaaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgggctactgctctcccctacgtcctggtaccccacttcctctctggagtaaaaaaaa 260

                                                                       
Query: 61  tagttctactgcatgaactaactttgggggtgtcctttggaatcccacagaagcccaggc 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tagttctactgcatgaactaagtttgggggtgtcctttggaatcccacagaagtccaggc 320

                                                                       
Query: 121 tagtatctgaggttttgtagaggccttgggtaactgaatagacagctatcagtgccttcc 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tagtatctgaggttctgtagaggccttgggtaactgaatagacagctatcagtgcctgcc 380

                                                                       
Query: 181 aaggcctctgacaggcaccaccctggggcccgcccgtttggatgttcctccttctgtggg 240
           ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||
Sbjct: 381 aaggcctctgacaggcaccaccctggggcccacccatttggatgttcctccttctgtagg 440

                                                             
Query: 241 tagggggctgatccactggccttagccatggcccactgatatgaatggta 290
           ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagggggctgagccactggccttagccatggcccactgatatgaatggta 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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