BAC Information

Click to search

BAC

Clone NameMSMg01-289M13
Chromosome14 (Build37)
Map Location 22,205,899 - 22,206,135
singlet/doubletsinglet
Overlap geneAdk
Upstream geneDnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1
Downstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289M13.T7 (MSMg01no289_m13.b1)MSMg01-289M13.TJ (MSMg01no289_m13.g1)
ACCAG419240AG419241
length741760
length of high quality
(start - end)
241 (123 - 363)188 (133 - 320)
definitionCHROMAT_FILE: MSMg01no289_m13.b1 PHD_FILE: MSMg01no289_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:10 2005CHROMAT_FILE: MSMg01no289_m13.g1 PHD_FILE: MSMg01no289_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATTCTTACTAACCTGGGCTACAGGGTATCTCAAGGTCAGCCTGG
GCTACAAAGTGAGATCTTGCCCTTAAAAAAGCAAAATAAAACAAAAGTAA
TTTAGAATATCATGTGGGATAATTTAGAATATCCTGACAAAATTATATTG
TGCATGATTTGTATAGTGTATTGTTCTCAGTCCTGAAAAAAATACAACTT
CCCCCAGCTGCCATGTTTCTCTCAAACAGGATCCTGCTGCAATGCAAAAG
AGCCCATACTGAGAAAGTATTGTTGGTTTCTACAAGGATCTGTTAAGGCA
GATTAATGCAATATAGACTACACATATTAAAACTTACATATTAATGCAAT
ATATACTAGTTGCGCCANACCCNCAAACTTACATATACTTTCCTTTAAAA
TGCCAAAAAAGTGTACTGAGCTCTAATATGCAGACTTGGTACAACGTTTT
AATTATTAACTCACGTTCATGTAACTGCAACCACATAAAGAAACACAGCC
CTATAACTGTAACAGGAGGATCGTGAGTTAGTTTGATGATAAGATCACTT
AAACGGACCCTCTCCAAAGGACGGAGGGATGTCGAAGAGGATATTCACCC
TTCATTTATTCTTTTCCCAACCCCCTTCTTGTCTTCACCACTCCTCCTCT
ACGCTCTATACTTATCCCCCCTTCTTCTTTCGCCTCTTTTA
TTGAXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCACGGGGAGGNGACAC
NANAGAAGTTTCAAAGAAAATCCTCACAAAGCACAGACAGACATCACATG
ACCTTGGGGGCCTTTTTTTTCAACCCAGGAGGTTACTTTTAAAAACCCGA
ATGCGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAA
GAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAG
ATATATAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAGAGAGATTTTGTGTTTTAGAGAGAAAGAAAGAGAGAGA
GAAAGAAAGCTTTTTTTTTTTCCCCCCCCCCCCCACGACTCAGNAGTTAA
GAGCACTTACTGCTCCCCCCCCCCTAATAAAAAAAAACAAGTTACCAGCG
CCTATCTTAAAGGTTAAGGACTGCCTATAACAGCAGCTTCAAGAGATCAG
ATGCTTGGATACCTTCTTCTGACATTCTTGGTCACCAGGCACATATGTGG
TGTGTGTATATGTGCGCATATATTTATATGCATACGCATATATGGAGGCT
GGTTCGCCTCTAAACACGTTTTCAGTCACAATATCTACAAATCTTCTTAA
ACGCGAAAACGCTTTATTTTTTTTTTTTTTGCACAACGGCAGCAAACCGT
TTACCCAAAAAAAAATAACACCCACTCTAACTCAACCACATTACCTCACA
ACATATTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_m13.b1 MSMg01no289_m13.b1 CHROMAT_FILE:
MSMg01no289_m13.b1 PHD_FILE: MSMg01no289_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:10 2005
         (241 letters)



>mm_chr14_22205696_22206336
          Length = 641

 Score =  443 bits (229), Expect = e-129
 Identities = 235/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   aaaaagcaaaataaaacaaaagtaatttagaatatcatgtgggataatttagaatatcct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaaaagcaaaataaaacaaaagtaatttagaatatcatgtgggataatttagaatatcct 263

                                                                       
Query: 64  gacaaaattatattgtgcatgatttgtatagtgtattgttctcagtcctgaaaaaaatac 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacaaaattatattgtgcgtgatttgtatagtgtattgttctcagtcctgaaaaaaatac 323

                                                                       
Query: 124 aacttcccccagctgccatgtttctctcaaacaggatcctgctgcaatgcaaaagagccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacttcccccagctgccatgtttctctcaaacaggatcctgctgcaatgcaaaagagccc 383

                                                                    
Query: 184 atactgagaaagtattgttggtttctacaaggatctgttaaggcagattaatgcaat 240
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atactgagaaagtagtgttggtttctacaaggatctgttaaggcagattaatgcaat 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)