BAC Information

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BAC

Clone NameMSMg01-289P18
Chromosome14 (Build37)
Map Location 87,623,389 - 87,623,672
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311, Diap3
Downstream geneEG665324, Tdrd3, LOC100043317, LOC100043780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289P18.T7 (MSMg01no289_p18.b1)MSMg01-289P18.TJ (MSMg01no289_p18.g1)
ACCAG419388AG419389
length732734
length of high quality
(start - end)
606 (127 - 732)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no289_p18.b1 PHD_FILE: MSMg01no289_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:24 2005CHROMAT_FILE: MSMg01no289_p18.g1 PHD_FILE: MSMg01no289_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:24 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCTTATTGCGCAGACCTTATGACCAATTAGGTAGCTGGTGGTTA
CCCCATGATGTATGTGTCTCTACTCGCACCTTTTGGAAAATCTGATTACT
ATCAACTGATACATCAACATGAATTGTAGAAGATCTTAGAAGGTCCCATT
TCTAAAGATGAAGAACTACATGTAAGCAGTGGCTGCTCACAGAGGAAGAA
TCAGTCTTCTCCAAGTGCAGGACTTGGGATAGACTATCCAATCTGAGCAG
TCAGCTCGAAGTACATATAAATGTGAGCAACATTAAAAGAACTCAGTAGG
TGGTACTCACATGTTTGTTTGTTTGTACACATGGGGCAGGGGAGAGAATA
GGGTAAGGTACTGGAAGGACCGGAGAAAGAAGGAGAAGAAACTATATAAA
TGCAAAATACATATATAAAATTTAAAATTAAATCTAAATGTTAAAAAAAG
ATTAGAGCAAGTAAATGTGCATATTTATGCACAGCTTGCTTTATCTACAT
CAATATAGTCAAGACCCGCTTGTTAGGGTCTCGTGTATGTGTCTCTATGT
GCATATGTTTGCATGTATGTCTATGTTTATGTATCTGTGTATATGTCTGT
CTGTCTGCCTGGATAGACTGTGATCTGTAAGGGTAAGAGAAATAAATCCA
TTCCCCCAAGCTGCTTTTGATGAGAGTGCATA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTCCAGAAAGAGGAGACAGCAAAGGC
CTTTGCTGCTTGAAACGGTGTGCAGGAAATAGCTAGTTTGTTATGTAACT
CTTATCATCAAACAATAGGAAGTAGGATGGAAGAATAACACCCCCCCCCC
CCAGACACTTGTGCAGAGAAGAAGTGGAATGTTAGGGTTGCTTTGAAAGG
TGAAGCAATAGAGATGACTCCAAGACAAGCTTGGTGGGGAGGGAGGAGGA
GGAGCTAAAGGAATGCCAGGCTTAGGCAATGCCCTTCTTTTATGTGCTGT
TTCTATGTCTATTTTTTTATGTACCGCCGCCGCCTTCATTTTAACATGTT
CCCCCAGGCCATTTGGCCCCCCGACGCAACAAAGACAGAGTAAGTGACCG
GCAGCCTCTTCATTACTTTAGGAATGGCATTGTCTGAACCCCAGGGAAGA
GGCACAGGTCAGAGATCCCCTCAGAAGAACACAAGAAAAGGAAGACAAAC
AGCACCTCTGTGGGATTGGGGATCTTCAGAAGCTAATTTCTCTAGAGATT
TTAGCCCTGGCCAGCAGTTGAACTGGAGACAGAGCAGGGGTTGTTACCTG
AGTGAGCAAAGACATCTTAGCAGCTCTGTCACTGGGAAAAGAGAAATTTA
ACCACGTTGGCATCTTCTCAAGTATTCAGGATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_p18.g1 MSMg01no289_p18.g1 CHROMAT_FILE:
MSMg01no289_p18.g1 PHD_FILE: MSMg01no289_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:24 2005
         (287 letters)



>mm_chr14_87623189_87623872
          Length = 684

 Score =  532 bits (275), Expect = e-155
 Identities = 283/287 (98%), Gaps = 3/287 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccagaaagaggagacagcaaaggcctttgctgcttgaaacggtgtgcaggaaatagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 attccagaaagaggagacagcaaaggcctttgctgcttgaaacggtgtgcaggaaatagc 425

                                                                       
Query: 61  tagtttgttatgtaactcttatcatcaaacaataggaagtaggatggaagaataacaccc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 424 tagtttgttatgtaactcttatcatcaaacaataggaagtaggatggaagaataaca--- 368

                                                                       
Query: 121 cccccccccagacacttgtgcagagaagaagtggaatgttagggttgctttgaaaggtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cccccccccagacacttgtgcagagaagaagtggaatgttagggttgctttgaaaggtga 308

                                                                       
Query: 181 agcaatagagatgactccaagacaagcttggtggggagggaggaggaggagctaaaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 agcaatagagatgactccaagacaagcttggtggggagggaggaggaggagctaaaggaa 248

                                                          
Query: 241 tgccaggcttaggcaatgcccttcttttatgtgctgtttctatgtct 287
           |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgccaggcataggcaatgcccttcttttatgtgctgtttctatgtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 684
Length adjustment: 9
Effective length of query: 278
Effective length of database: 675
Effective search space:   187650
Effective search space used:   187650
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)