BAC Information

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BAC

Clone NameMSMg01-290M19
Chromosome14 (Build37)
Map Location 118,302,701 - 118,454,304
singlet/doubletdoublet
Overlap geneGpc6, 5730405N03Rik, LOC100043822, Dct
Upstream genenone
Downstream geneTgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290M19.T7 (MSMg01no290_m19.b1)MSMg01-290M19.TJ (MSMg01no290_m19.g1)
ACCAG419979AG419980
length757756
length of high quality
(start - end)
672 (76 - 747)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no290_m19.b1 PHD_FILE: MSMg01no290_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:27 2005CHROMAT_FILE: MSMg01no290_m19.g1 PHD_FILE: MSMg01no290_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,453,633 - 118,454,304)(118,302,701 - 118,302,982)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGAGAGATTACGAATGTAGTAACACAGCTTATTGCGAAGATTGG
GACCTTGGGGTCAGGGAGATACAGCCCTTCCAATGCCCTGCTATCCGAGG
TCCCAGGCTCCCTCTCCTCTCCTGTAACATTGGGATAATAACCAGCGACT
TGATAGGACTAAGAGGAAAACAAGCCGTGCACTGTGATTGGAAGGTGTCC
TGGTTGAGGACACCAAAGTGAATGGCAAAGGACGGCTTCTCTCAGCAGGT
GACACTCCAGTGACAGGAAGCCAGGAGGGGATATTTCAGGCAGAAGAAAC
AGCAGTACAATGGCTGAGAGTTCCCATGACTAGATCTGTCTGGGTAGCAG
TGACCATAGTACTCTGCCCAACAAAGACAGACAGAAAGACAGGCAGCAGA
AGTTCTGACATGACCTTCTAGTCCAGCTCCTCCCAAACTCTATGGCACAG
AAGTTTTGAAAAACAGTTTTAAGGCCAACGTGAGATCTAAATGTGCATGG
TGTCAGTGCGAATAACCCTCCAGGCTGGCACCTGACCGATCATGTGCAAG
AGTGTATGTCAATGGCCAAGCTTCTAAATGCTATATCCCAGCTTCTGTCT
TTACTGTATCCATCCTAATGTAGGTCAGAAGCACACAGGCTGGGATCTGC
TGACCACCCTGTGTAGCACATGGAACAACGTTTGTCATCACTCTAAGTGC
TTCAGAA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCTGTCTGTCTGTCTGTCTGTCT
GGTTGGCTGGCTGGCTGGCTGGCTCGCTGGCTGTCAGTCTGCAGGATAAA
ACAGGACAGAGTTCCAGGCTGCAGCAGGGTTGGCCTCCAGGCTGTCACAG
AGCAACACATCCTGACACGGAGGCTACACATTTGTGAAGGGCTCCAGGAC
AGACAGACGGGTGGTTTGCATGGTGCTGCCTCCCTTGCAAAGCCGGAAGC
AGCCATGAGGAGACCCCTCGGGCTGGTTTCCATTCCCAAAGGACTAATGT
AACACCCCTATAGGTTTTGTGTTATGTCTGCCACCACCAAAGGCCAACCC
AGCGGTGACAAAGCACTTTACTAGATTCGCTGTTGATCTCTTCCACAGCC
TGGCTCCGTAAGCCCTGATGGGTAAAGGAGAGCAGGAGTGTGAGGTTTAC
CCTGCTGGTATGAGGACCAGTCTTCCAGCCCAGACTGACTTCACTAAATC
GATGACAGAACCCAGGAAAGGGCACTGTTCTGTCTCCTGTCACCCAGCTA
AAGGAAAACACAGAAAGACTCTCGGGGGAACAGTGGGACAAAGAGCAGTA
GGTCTGGATGCCAGCAACGACTGGGGTTGTTTCCAGAACCTTCAAGCAGC
TCTGCTCCAGAGGGCGCTTCTCCTTCAATGGCTGACCTGTTCTCAGAGGC
TGCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_m19.b1 MSMg01no290_m19.b1 CHROMAT_FILE:
MSMg01no290_m19.b1 PHD_FILE: MSMg01no290_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:27 2005
         (672 letters)



>mm_chr14_118453433_118454504
          Length = 1072

 Score = 1230 bits (636), Expect = 0.0
 Identities = 663/672 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taacacagcttattgcgaagattgggaccttggggtcagggagatacagcccttccaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 872 taacacagcttattgcgaagattgggaccttggggtcagggagatacagtccttccaatg 813

                                                                       
Query: 61  ccctgctatccgaggtcccaggctccctctcctctcctgtaacattgggataataaccag 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 812 ccctgctatccgaggtcccaggctccctctcctctcatgtaacattgggataataaccag 753

                                                                       
Query: 121 cgacttgataggactaagaggaaaacaagccgtgcactgtgattggaaggtgtcctggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 cgacttgataggactaagaggaaaacaagccgtgcactgtgattggaaggtgtcctggtt 693

                                                                       
Query: 181 gaggacaccaaagtgaatggcaaaggacggcttctctcagcaggtgacactccagtgaca 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 692 gaggacaccaaagtgaatggcaaaggacggctcctctcagcaggtgacactccagtgaca 633

                                                                       
Query: 241 ggaagccaggaggggatatttcaggcagaagaaacagcagtacaatggctgagagttccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggaagccaggaggggatatttcaggcagaagaaacagcagtacaatggctgagagttccc 573

                                                                       
Query: 301 atgactagatctgtctgggtagcagtgaccatagtactctgcccaacaaagacagacaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atgactagatctgtctgggtagcagtgaccatagtactctgcccaacaaagacagacaga 513

                                                                       
Query: 361 aagacaggcagcagaagttctgacatgaccttctagtccagctcctcccaaactctatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aagacaggcagcagaagttctgacatgaccttctagtccagctcctcccaaactctatgg 453

                                                                       
Query: 421 cacagaagttttgaaaaacagttttaaggccaacgtgagatctaaatgtgcatggtgtca 480
           ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 452 cacagaagttttggaaaacagttttaaggccaacgtgagatctaaatgcgcatggtgtca 393

                                                                       
Query: 481 gtgcgaataaccctccaggctggcacctgaccgatcatgtgcaagagtgtatgtcaatgg 540
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtgcgaatgaccctccaggctggcacctgaccgatcatgtgcaagagtgtatgtcaatgg 333

                                                                       
Query: 541 ccaagcttctaaatgctatatcccagcttctgtctttactgtatccatcctaatgtaggt 600
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 332 ccaagcttctaaatgctatatcccagtttctgtctttactgtatccatcctaatgtaggt 273

                                                                       
Query: 601 cagaagcacacaggctgggatctgctgaccaccctgtgtagcacatggaacaacgtttgt 660
           |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 272 cagaagcacacaggctgggatctgctgaccaccctgggtagcacatggaacaatgtttgt 213

                       
Query: 661 catcactctaag 672
           ||||||||||||
Sbjct: 212 catcactctaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no290_m19.g1 MSMg01no290_m19.g1 CHROMAT_FILE:
MSMg01no290_m19.g1 PHD_FILE: MSMg01no290_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:27 2005
         (290 letters)



>mm_chr14_118302495_118303184
          Length = 690

 Score =  484 bits (250), Expect = e-141
 Identities = 274/282 (97%)
 Strand = Plus / Plus

                                                                       
Query: 7   ctgtctgtctgtctgtctggttggctggctggctggctggctcgctggctgtcagtctgc 66
           |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 207 ctgtctgtctgtctgtctggttggctggctggctggctggctagctggctatcagtctgc 266

                                                                       
Query: 67  aggataaaacaggacagagttccaggctgcagcagggttggcctccaggctgtcacagag 126
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aggacaaaacagaacagagttccaggctgcagcagggttggcctccaggctgtcacagag 326

                                                                       
Query: 127 caacacatcctgacacggaggctacacatttgtgaagggctccaggacagacagacgggt 186
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 caacacatcctgagacggaggctacacatttgtgaagggctccaggacagacagacgggt 386

                                                                       
Query: 187 ggtttgcatggtgctgcctcccttgcaaagccggaagcagccatgaggagacccctcggg 246
           ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 387 ggtttgcatggtgctgcctcccttgcaaagccgaaagcaaccatgaggagacccctcggg 446

                                                     
Query: 247 ctggtttccattcccaaaggactaatgtaacacccctatagg 288
           |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 447 ctggtttccattcccaaaggcctaatgtaacacccctatagg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)